C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vinculin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000623461 VCL-007 ENSG00000035403 9606 + 10:73995193-74120160 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastHeartLungOvaryENST00000623461
Transcript ID Bladder Brain Breast Heart Lung Ovary
ENST00000623461 2.331±0.00 0.601±0.00 3.652±0.00 2.157±0.00 3.462±0.00 2.545±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00008T CIL_00008T_0001 CGP 10:73995193-74151063

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022369 Vcl-201 protein_coding Mus_musculus 0 3386
ENSDART00000039828 vcla-201 protein_coding Danio_rerio 0 425
ENSDART00000110304 vcla-202 protein_coding Danio_rerio 0 425
ENSDART00000124167 vcla-001 protein_coding Danio_rerio 0 425
ENSMUST00000154460 Ap3m1-001 protein_coding Mus_musculus 0 285
ENSMUST00000122974 Ap3m1-008 processed_transcript Mus_musculus 0 254
ENSMUST00000131469 Ap3m1-009 processed_transcript Mus_musculus 0 252

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