C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vinculin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000022369 Vcl-201 ENSMUSG00000021823 10090 + 14:20929433-21033673 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022369
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022369 22.898±8.64 19.583±4.44 24.638±0.00 5.245±0.97 17.113±6.52 16.329±9.20 11.788±3.85 8.523±2.34 5.265±1.90 37.721±18.48 3.277±0.79 39.333±10.14 26.924±22.61 6.172±2.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00008T CIL_00008T_0002 CGP 14:20929433-21052508

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002009 IEA morphogenesis of an epithelium
GO:0002162 IEA dystroglycan binding
GO:0003779 IEA actin binding
GO:0005198 IEA structural molecule activity
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0005911 IDA cell-cell junction
GO:0005912 IDA adherens junction
GO:0005913 IEA cell-cell adherens junction
GO:0005916 IDA fascia adherens
GO:0005925 IDA focal adhesion
GO:0007155 IDA cell adhesion
GO:0015629 IEA actin cytoskeleton
GO:0030032 IDA lamellipodium assembly
GO:0030334 IDA regulation of cell migration
GO:0031982 IEA vesicle
GO:0034333 IEA adherens junction assembly
GO:0034394 IEA protein localization to cell surface
GO:0043034 IDA costamere
GO:0043234 IEA protein complex
GO:0043297 IEA apical junction assembly
GO:0045294 IEA alpha-catenin binding
GO:0048675 IGI axon extension
GO:0070062 IEA extracellular vesicular exosome
GO:0070527 IEA platelet aggregation
GO:0090136 IEA epithelial cell-cell adhesion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000039828 vcla-201 protein_coding Danio_rerio 0 414
ENSDART00000110304 vcla-202 protein_coding Danio_rerio 0 414
ENSDART00000124167 vcla-001 protein_coding Danio_rerio 0 414
ENST00000211998 VCL-201 protein_coding Homo_sapiens 0 3807
ENST00000372755 VCL-001 protein_coding Homo_sapiens 0 4588
ENST00000436396 VCL-002 protein_coding Homo_sapiens 0 2305
ENST00000472585 VCL-004 retained_intron Homo_sapiens 0 652
ENST00000478896 VCL-003 processed_transcript Homo_sapiens 0 560
ENST00000623461 VCL-007 processed_transcript Homo_sapiens 0 3386
ENST00000624354 VCL-006 nonsense_mediated_decay Homo_sapiens 0 3349

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