C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pre-B-cell leukemia homeobox 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000127078 PBX4 (2 of 2)-201 ENSDARG00000091547 7955 + Zv9_NA116:3881-6636 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000127078
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000127078 3.733±2.72 1.204±0.65 0.489±0.00 0.216±0.00 2.651±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000064438 Pbx1-005 protein_coding Mus_musculus 0 398
ENSMUST00000072863 Pbx1-201 protein_coding Mus_musculus 0 399
ENSMUST00000176540 Pbx1-002 protein_coding Mus_musculus 0 399
ENSMUST00000176790 Pbx1-004 protein_coding Mus_musculus 0 399
ENSMUST00000188912 Pbx1-001 protein_coding Mus_musculus 0 399
ENST00000251203 PBX4-001 protein_coding Homo_sapiens 0 278
ENST00000367897 PBX1-002 protein_coding Homo_sapiens 0 388
ENST00000420696 PBX1-001 protein_coding Homo_sapiens 0 388
ENST00000468104 PBX1-004 processed_transcript Homo_sapiens 0 388
ENST00000482110 PBX1-009 protein_coding Homo_sapiens 0 281
ENST00000496120 PBX1-016 processed_transcript Homo_sapiens 0 388
ENST00000540236 PBX1-201 protein_coding Homo_sapiens 0 388
ENST00000557978 PBX4-003 nonsense_mediated_decay Homo_sapiens 0.000007 57
ENST00000558222 PBX4-002 nonsense_mediated_decay Homo_sapiens 0.000005 57
ENST00000558837 PBX1-019 protein_coding Homo_sapiens 0 298
ENST00000559240 PBX1-012 protein_coding Homo_sapiens 0 387
ENST00000559578 PBX1-013 protein_coding Homo_sapiens 0 281
ENST00000559735 PBX4-005 retained_intron Homo_sapiens 6e-19 99
ENST00000560469 PBX1-015 processed_transcript Homo_sapiens 0 388
ENST00000560641 PBX1-017 protein_coding Homo_sapiens 0 388
ENST00000612123 PBX1-202 protein_coding Homo_sapiens 0 388

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