C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: hyperpolarization activated cyclic nucleotide-gated potassium channel 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000136140 hcn4-001 ENSDARG00000061685 7955 - 18:804533-943685 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyMuscleENSDART00000136140
Transcript ID Brain Heart Kidney Muscle
ENSDART00000136140 0.600±0.00 0.875±0.31 0.180±0.18 0.004±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000HP CIL_0000HP_0001 CGP 18:804501-958293

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005249 IEA voltage-gated potassium channel activity
GO:0005887 IBA integral to plasma membrane
GO:0006810 IEA transport
GO:0006811 IEA ion transport
GO:0006813 IEA potassium ion transport
GO:0016020 IEA membrane
GO:0016021 IEA integral to membrane
GO:0034765 IBA regulation of ion transmembrane transport
GO:0042391 IBA regulation of membrane potential
GO:0055085 IEA transmembrane transport
GO:0071805 IBA potassium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000020581 Hcn2-201 protein_coding Mus_musculus 0 1277
ENSMUST00000029686 Hcn3-001 protein_coding Mus_musculus 0 887
ENSMUST00000034889 Hcn4-201 protein_coding Mus_musculus 0 1426
ENSMUST00000099513 Hcn2-001 protein_coding Mus_musculus 0 1277
ENSMUST00000127654 Hcn3-004 retained_intron Mus_musculus 0 316
ENSMUST00000132156 Hcn3-003 retained_intron Mus_musculus 0 431
ENST00000251287 HCN2-001 protein_coding Homo_sapiens 0 1343
ENST00000261917 HCN4-001 protein_coding Homo_sapiens 0 1498
ENST00000368358 HCN3-001 protein_coding Homo_sapiens 0 928
ENST00000467204 HCN3-003 processed_transcript Homo_sapiens 0 316
ENST00000496230 HCN3-002 processed_transcript Homo_sapiens 0 394
ENST00000568218 RP13-395E19.2-001 processed_pseudogene Homo_sapiens 0 1212
ENST00000569415 RP11-261B23.1-001 processed_pseudogene Homo_sapiens 0 1201
ENST00000572822 HCN3-002 processed_transcript Homo_sapiens 0 394
ENST00000575670 HCN3-001 protein_coding Homo_sapiens 0 928
ENST00000576844 HCN3-003 processed_transcript Homo_sapiens 0 316

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