C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: poly(A) binding protein, cytoplasmic 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000063219 Pabpc2-001 ENSMUSG00000051732 10090 + 18:39773497-39776082 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000063219
Transcript ID Breast Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000063219 0.027±0.00 0.044±0.03 0.067±0.03 0.007±0.00 0.016±0.00 0.032±0.00 0.006±0.01 265.666±42.56

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005925 IEA focal adhesion
GO:0006378 TAS mRNA polyadenylation
GO:0008022 IEA protein C-terminus binding
GO:0008143 ISS poly(A) binding
GO:0008266 IEA poly(U) RNA binding
GO:0010494 IEA cytoplasmic stress granule
GO:0016020 IEA membrane
GO:0030529 IEA ribonucleoprotein complex
GO:0036464 IEA cytoplasmic ribonucleoprotein granule
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome
GO:0071013 IEA catalytic step 2 spliceosome
GO:2000623 IEA negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000148392 pabpc1a-002 protein_coding Danio_rerio 0 523
ENSDART00000024729 pabpc1a-001 protein_coding Danio_rerio 0 523
ENSDART00000149449 pabpc1a-006 processed_transcript Danio_rerio 0 219
ENST00000281589 PABPC3-001 protein_coding Homo_sapiens 0 1415
ENST00000318607 PABPC1-001 protein_coding Homo_sapiens 0 1938
ENST00000517921 PABPC1-010 retained_intron Homo_sapiens 0 436
ENST00000518196 PABPC1-020 protein_coding Homo_sapiens 0 363
ENST00000519004 PABPC1-002 protein_coding Homo_sapiens 0 1652
ENST00000520142 PABPC1-008 protein_coding Homo_sapiens 0 424
ENST00000521865 PABPC1-015 protein_coding Homo_sapiens 0 457
ENST00000522387 PABPC1-003 protein_coding Homo_sapiens 0 350
ENST00000539977 PABPC1P4-001 processed_pseudogene Homo_sapiens 0 1317
ENST00000610907 PABPC1-201 protein_coding Homo_sapiens 0 1269

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