C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 11839
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120647 Gm11839-001 ENSMUSG00000083246 10090 + 4:12114284-12116236 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000120647
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000120647 0.208±0.06 0.858±0.19 0.927±0.17 0.527±0.12 0.575±0.23 0.342±0.18 0.210±0.06 0.223±0.13 0.323±0.06 0.090±0.03 0.701±0.29 0.241±0.09 0.079±0.04

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000148392 pabpc1a-002 protein_coding Danio_rerio 0 617
ENSDART00000024729 pabpc1a-001 protein_coding Danio_rerio 0 617
ENSDART00000032474 pabpc1b-001 protein_coding Danio_rerio 0 593
ENSDART00000149449 pabpc1a-006 processed_transcript Danio_rerio 0 307
ENSDART00000149603 pabpc1a-004 processed_transcript Danio_rerio 0 259
ENSDART00000151056 pabpc1b-004 nonsense_mediated_decay Danio_rerio 0 220
ENSDART00000143087 pabpc1b-002 protein_coding Danio_rerio 0 219
ENSDART00000149264 pabpc1a-003 processed_transcript Danio_rerio 3e-30 137
ENST00000372856 PABPC4-004 protein_coding Homo_sapiens 0 1834
ENST00000372857 PABPC4-001 protein_coding Homo_sapiens 0 1762
ENST00000372858 PABPC4-002 protein_coding Homo_sapiens 0 2281
ENST00000372862 PABPC4-003 protein_coding Homo_sapiens 0 1762
ENST00000421687 PABPC4-017 protein_coding Homo_sapiens 0 1600
ENST00000437136 PABPC4-013 protein_coding Homo_sapiens 0 542
ENST00000461578 PABPC4-014 retained_intron Homo_sapiens 2e-33 145
ENST00000468476 PABPC4-006 retained_intron Homo_sapiens 4e-32 145
ENST00000470443 PABPC4-007 nonsense_mediated_decay Homo_sapiens 0 900
ENST00000474378 PABPC4-008 protein_coding Homo_sapiens 0 597
ENST00000477556 PABPC4-009 retained_intron Homo_sapiens 0 279
ENST00000482028 PABPC4-012 retained_intron Homo_sapiens 0.000000000000001 88
ENST00000483770 PABPC4-016 retained_intron Homo_sapiens 0 377
ENST00000484555 PABPC4-015 retained_intron Homo_sapiens 1.99993e-41 172
ENST00000492468 PABPC4-005 retained_intron Homo_sapiens 0 316
ENST00000492519 PABPC4-010 retained_intron Homo_sapiens 0 320
ENST00000513632 PABPC4-020 retained_intron Homo_sapiens 0 231
ENST00000525045 PABPC4-023 retained_intron Homo_sapiens 0 344
ENST00000525669 PABPC4-022 retained_intron Homo_sapiens 0 484
ENST00000525751 PABPC4-019 retained_intron Homo_sapiens 0 457
ENST00000527718 PABPC4-021 protein_coding Homo_sapiens 0 675
ENST00000529216 PABPC4-025 processed_transcript Homo_sapiens 0 204
ENST00000530186 PABPC4-024 protein_coding Homo_sapiens 0 211
ENST00000549280 RP11-813P10.2-001 processed_pseudogene Homo_sapiens 0 292
ENST00000555663 CTD-2643K12.1-001 processed_pseudogene Homo_sapiens 0 346

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