C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 11841
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117060 Gm11841-001 ENSMUSG00000081593 10090 + 4:12125290-12127252 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000117060
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000117060 0.051±0.04 0.418±0.07 0.176±0.05 0.387±0.23 0.082±0.03 0.049±0.01 0.095±0.01 0.050±0.02 0.074±0.10 0.093±0.06 0.027±0.00 0.282±0.21 0.100±0.02 0.032±0.01

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000148392 pabpc1a-002 protein_coding Danio_rerio 0 628
ENSDART00000024729 pabpc1a-001 protein_coding Danio_rerio 0 628
ENSDART00000032474 pabpc1b-001 protein_coding Danio_rerio 0 610
ENSDART00000149449 pabpc1a-006 processed_transcript Danio_rerio 0 307
ENSDART00000149603 pabpc1a-004 processed_transcript Danio_rerio 0 259
ENSDART00000151056 pabpc1b-004 nonsense_mediated_decay Danio_rerio 0 220
ENSDART00000143087 pabpc1b-002 protein_coding Danio_rerio 0 219
ENSDART00000082327 pabpc4-001 protein_coding Danio_rerio 2e-37 161
ENSDART00000149264 pabpc1a-003 processed_transcript Danio_rerio 3e-30 137
ENST00000372856 PABPC4-004 protein_coding Homo_sapiens 0 1845
ENST00000372857 PABPC4-001 protein_coding Homo_sapiens 0 1773
ENST00000372858 PABPC4-002 protein_coding Homo_sapiens 0 2342
ENST00000372862 PABPC4-003 protein_coding Homo_sapiens 0 1773
ENST00000421687 PABPC4-017 protein_coding Homo_sapiens 0 1622
ENST00000437136 PABPC4-013 protein_coding Homo_sapiens 0 560
ENST00000461578 PABPC4-014 retained_intron Homo_sapiens 3e-36 154
ENST00000468476 PABPC4-006 retained_intron Homo_sapiens 6e-35 154
ENST00000470443 PABPC4-007 nonsense_mediated_decay Homo_sapiens 0 911
ENST00000474378 PABPC4-008 protein_coding Homo_sapiens 0 597
ENST00000477556 PABPC4-009 retained_intron Homo_sapiens 0 289
ENST00000483770 PABPC4-016 retained_intron Homo_sapiens 0 377
ENST00000484555 PABPC4-015 retained_intron Homo_sapiens 1.99993e-41 172
ENST00000492468 PABPC4-005 retained_intron Homo_sapiens 4e-35 154
ENST00000492519 PABPC4-010 retained_intron Homo_sapiens 0 326
ENST00000513632 PABPC4-020 retained_intron Homo_sapiens 0 237
ENST00000525045 PABPC4-023 retained_intron Homo_sapiens 0 350
ENST00000525669 PABPC4-022 retained_intron Homo_sapiens 0 496
ENST00000525751 PABPC4-019 retained_intron Homo_sapiens 0 457
ENST00000527718 PABPC4-021 protein_coding Homo_sapiens 0 686
ENST00000529216 PABPC4-025 processed_transcript Homo_sapiens 0 204
ENST00000555663 CTD-2643K12.1-001 processed_pseudogene Homo_sapiens 0 363

Loading