C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: adenomatosis polyposis coli
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000149956 apc-001 ENSDARG00000058868 7955 + 10:1878297-1921518 protein_coding

Danio rerio EnsemblZv9

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Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000149956
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000149956 22.476±9.94 2.139±1.24 1.018±0.16 0.836±0.00 2.985±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005KL CIL_0005KL_0001 CGP 10:1772173-1921518

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005488 IEA binding
GO:0005515 IEA protein binding
GO:0008013 IEA beta-catenin binding
GO:0008017 IEA microtubule binding
GO:0016055 IEA Wnt receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000079362 Apc-001 protein_coding Mus_musculus 0 326
ENSMUST00000115781 Apc-201 protein_coding Mus_musculus 0 326
ENSMUST00000165590 Apc-006 nonsense_mediated_decay Mus_musculus 0 235
ENST00000233607 APC2-201 protein_coding Homo_sapiens 1.4013e-45 191
ENST00000238483 APC2-006 protein_coding Homo_sapiens 0 191
ENST00000257430 APC-001 protein_coding Homo_sapiens 3e-22 113
ENST00000508376 APC-004 protein_coding Homo_sapiens 3e-22 113
ENST00000508624 APC-003 nonsense_mediated_decay Homo_sapiens 2e-22 113
ENST00000535453 APC2-004 protein_coding Homo_sapiens 1.4013e-45 191
ENST00000590469 APC2-001 protein_coding Homo_sapiens 0 191
ENST00000593146 APC2-003 retained_intron Homo_sapiens 1e-21 110

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