C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: adenomatosis polyposis coli
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000115781 Apc-201 ENSMUSG00000005871 10090 + 18:34220984-34322189 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaENSMUST00000115781
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta
ENSMUST00000115781 2.261±0.33 20.821±5.54 2.243±0.09 2.144±0.39 0.317±0.00 0.640±0.16 0.693±0.47 3.084±0.00 1.166±0.30 2.637±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005KL CIL_0005KL_0003 CGP 18:33796327-34322189

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000281 IMP mitotic cytokinesis
GO:0001822 IMP kidney development
GO:0001942 IMP hair follicle development
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005881 IDA cytoplasmic microtubule
GO:0006974 IEA cellular response to DNA damage stimulus
GO:0007026 IMP negative regulation of microtubule depolymerization
GO:0007050 IEA cell cycle arrest
GO:0007091 IGI metaphase/anaphase transition of mitotic cell cycle
GO:0007389 IMP pattern specification process
GO:0007409 IMP axonogenesis
GO:0008013 IDA beta-catenin binding
GO:0008285 IMP negative regulation of cell proliferation
GO:0009798 IMP axis specification
GO:0009952 IMP anterior/posterior pattern specification
GO:0009953 IMP dorsal/ventral pattern formation
GO:0009954 IMP proximal/distal pattern formation
GO:0016055 IDA Wnt signaling pathway
GO:0016477 IMP cell migration
GO:0019827 IMP stem cell maintenance
GO:0030178 IMP negative regulation of Wnt signaling pathway
GO:0030334 IGI regulation of cell migration
GO:0030335 IMP positive regulation of cell migration
GO:0030424 IDA axon
GO:0030426 IDA growth cone
GO:0030856 IMP regulation of epithelial cell differentiation
GO:0030858 IGI positive regulation of epithelial cell differentiation
GO:0031116 IMP positive regulation of microtubule polymerization
GO:0031122 IGI cytoplasmic microtubule organization
GO:0031253 IDA cell projection membrane
GO:0033077 IMP T cell differentiation in thymus
GO:0035019 IGI somatic stem cell maintenance
GO:0035371 IDA microtubule plus-end
GO:0042483 IMP negative regulation of odontogenesis
GO:0042995 IDA cell projection
GO:0043065 IMP positive regulation of apoptotic process
GO:0043066 IMP negative regulation of apoptotic process
GO:0043409 IGI negative regulation of MAPK cascade
GO:0043588 IMP skin development
GO:0044295 IDA axonal growth cone
GO:0044336 IGI canonical Wnt signaling pathway involved in negative regulation of apoptotic process
GO:0044337 IGI canonical Wnt signaling pathway involved in positive regulation of apoptotic process
GO:0045595 IGI regulation of cell differentiation
GO:0045597 IMP positive regulation of cell differentiation
GO:0045667 IMP regulation of osteoblast differentiation
GO:0045670 IMP regulation of osteoclast differentiation
GO:0045732 IMP positive regulation of protein catabolic process
GO:0045785 IMP positive regulation of cell adhesion
GO:0046716 IGI muscle cell cellular homeostasis
GO:0048538 IMP thymus development
GO:0050680 IGI negative regulation of epithelial cell proliferation
GO:0051010 IDA microtubule plus-end binding
GO:0051171 IMP regulation of nitrogen compound metabolic process
GO:0051276 IGI chromosome organization
GO:0051726 IMP regulation of cell cycle
GO:0051781 IMP positive regulation of cell division
GO:0051988 IMP regulation of attachment of spindle microtubules to kinetochore
GO:0060041 IMP retina development in camera-type eye
GO:0060070 IMP canonical Wnt signaling pathway
GO:0060770 IMP negative regulation of epithelial cell proliferation involved in prostate gland development
GO:0090090 IMP negative regulation of canonical Wnt signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000044432 apc-201 protein_coding Danio_rerio 0 326
ENSDART00000149956 apc-001 protein_coding Danio_rerio 0 326
ENST00000257430 APC-001 protein_coding Homo_sapiens 0 10010
ENST00000502371 APC-007 nonsense_mediated_decay Homo_sapiens 0 3046
ENST00000504915 APC-011 protein_coding Homo_sapiens 0 1083
ENST00000505084 APC-006 retained_intron Homo_sapiens 0 366
ENST00000505350 APC-012 nonsense_mediated_decay Homo_sapiens 0 494
ENST00000507379 APC-002 protein_coding Homo_sapiens 0 3563
ENST00000508376 APC-004 protein_coding Homo_sapiens 0 10010
ENST00000508624 APC-003 nonsense_mediated_decay Homo_sapiens 0 7389
ENST00000509732 APC-008 protein_coding Homo_sapiens 0 514
ENST00000512211 APC-005 protein_coding Homo_sapiens 0 4063
ENST00000520401 CTC-554D6.1-001 nonsense_mediated_decay Homo_sapiens 0 364

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