C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM homeobox protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000000253 Lhx2-001 ENSMUSG00000000247 10090 + 2:38350759-38369733 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000000253
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000000253 0.017±0.01 0.020±0.01 0.005±0.00 15.924±8.74 0.409±0.09 0.058±0.04 0.020±0.01 0.036±0.02 1.739±0.53 0.009±0.00 0.013±0.00 0.141±0.10 2.024±1.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006WO CIL_0006WO_0002 CGP 2:37798991-38369733
CIL_000847 CIL_000847_0002 VISTA 2:37842558-38444874
CIL_0008FJ CIL_0008FJ_0002 VISTA 2:37895268-38499898
CIL_0007MV CIL_0007MV_0002 UCNEbase 2:38111928-38614796
CIL_0008N3 CIL_0008N3_0002 VISTA 2:38235055-38837083
CIL_00098L CIL_00098L_0002 VISTA 2:38294702-38895720
CIL_0006WH CIL_0006WH_0002 CGP 2:38339281-38588041

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001076 IPI RNA polymerase II transcription factor binding transcription factor activity
GO:0001843 IMP neural tube closure
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0005622 IDA intracellular
GO:0005634 IDA nucleus
GO:0006366 IPI transcription from RNA polymerase II promoter
GO:0007399 IMP nervous system development
GO:0007411 IMP axon guidance
GO:0007420 IMP brain development
GO:0007498 IMP mesoderm development
GO:0008270 IEA zinc ion binding
GO:0009953 IMP dorsal/ventral pattern formation
GO:0021537 IMP telencephalon development
GO:0021772 IMP olfactory bulb development
GO:0021978 IGI telencephalon regionalization
GO:0021987 IMP cerebral cortex development
GO:0022008 IDA neurogenesis
GO:0030182 IMP neuron differentiation
GO:0043565 IDA sequence-specific DNA binding
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0048646 IMP anatomical structure formation involved in morphogenesis
GO:0048675 IDA axon extension
GO:0060041 IGI retina development in camera-type eye
GO:2000678 IGI negative regulation of transcription regulatory region DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000367387 LHX9-004 protein_coding Homo_sapiens 0 303
ENST00000367390 LHX9-001 protein_coding Homo_sapiens 0 303
ENST00000367391 LHX9-003 protein_coding Homo_sapiens 0 303
ENST00000373615 LHX2-001 protein_coding Homo_sapiens 0 3112
ENST00000446480 LHX2-002 protein_coding Homo_sapiens 0 1784
ENST00000488674 LHX2-003 protein_coding Homo_sapiens 0 1168
ENST00000560961 LHX2-004 protein_coding Homo_sapiens 0 660
ENST00000561173 LHX9-007 protein_coding Homo_sapiens 0 303

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