C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Uncharacterized protein {ECO:0000313|Ensembl:ENSP00000468275}
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000592248 CTD-2132N18.3-002 ENSG00000267261 9606 - 17:42119674-42130564 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartLungENST00000592248
Transcript ID Heart Lung
ENST00000592248 2.448±0.00 7.939±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004GH CIL_0004GH_0001 CGP 17:42101404-42121358

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006184 IEA GTP catabolic process
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000019317 Rab5c-002 protein_coding Mus_musculus 0 660
ENSMUST00000107364 Rab5c-001 protein_coding Mus_musculus 0 658
ENSMUST00000155843 Rab5c-004 protein_coding Mus_musculus 0 375
ENSDART00000129730 rab5aa-201 protein_coding Danio_rerio 0 370
ENSDART00000034124 rab5aa-001 protein_coding Danio_rerio 0 370
ENSMUST00000120190 Gm13991-001 processed_pseudogene Mus_musculus 0 292
ENSMUST00000000727 Rab5b-201 protein_coding Mus_musculus 0 281
ENSDART00000142127 rab5aa-002 retained_intron Danio_rerio 0 233
ENSMUST00000155500 Rab5c-003 protein_coding Mus_musculus 2.00386e-43 180
ENSMUST00000103118 Kat2a-002 protein_coding Mus_musculus 7.00649e-43 178
ENSMUST00000006973 Kat2a-001 protein_coding Mus_musculus 7.00649e-43 178
ENSMUST00000126299 Kat2a-003 processed_transcript Mus_musculus 7.00649e-43 178
ENSMUST00000153526 Kat2a-004 processed_transcript Mus_musculus 7.00649e-43 178
ENSDART00000028072 kat2a-201 protein_coding Danio_rerio 3e-32 143
ENSDART00000154834 kat2a-001 protein_coding Danio_rerio 3e-32 143

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