C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: upstream transcription factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000001284 Usf1-003 ENSMUSG00000026641 10090 + 1:171411313-171418121 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000001284
Transcript ID Adipose Adrenal Bladder Breast Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000001284 8.883±2.38 12.541±2.43 6.189±0.40 11.897±0.88 3.763±0.55 7.146±0.71 4.888±1.38 13.639±1.35 16.028±3.70 6.251±1.16 2.635±0.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00026D CIL_00026D_0002 CGP 1:171411313-171464603

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005667 IC transcription factor complex
GO:0045893 IDA positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000368019 USF1-003 protein_coding Homo_sapiens 0 588
ENST00000368020 USF1-002 protein_coding Homo_sapiens 0 965
ENST00000368021 USF1-001 protein_coding Homo_sapiens 0 965
ENST00000472217 USF1-005 retained_intron Homo_sapiens 0 255
ENST00000473969 USF1-004 nonsense_mediated_decay Homo_sapiens 0 1330
ENST00000491629 USF1-007 retained_intron Homo_sapiens 0 322
ENST00000496363 USF1-006 retained_intron Homo_sapiens 0 715
ENST00000528768 USF1-009 protein_coding Homo_sapiens 0 584
ENST00000529476 USF1-010 retained_intron Homo_sapiens 0 344
ENST00000531842 USF1-011 protein_coding Homo_sapiens 0 464

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