C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: upstream transcription factor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026641 Usf1 10090 + 1:171411313-171420352 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000001284 Usf1-003 171411313-171418121 nonsense_mediated_decay
  ENSMUST00000159207 Usf1-004 171411313-171416977 protein_coding
  ENSMUST00000159371 Usf1-007 171417460-171418431 retained_intron
  ENSMUST00000159466 Usf1-005 171411374-171415613 retained_intron
  ENSMUST00000159929 Usf1-008 171417330-171417930 retained_intron
  ENSMUST00000160335 Usf1-009 171411334-171417356 retained_intron
  ENSMUST00000160486 Usf1-002 171411384-171418757 protein_coding
  ENSMUST00000161241 Usf1-001 171411313-171419142 protein_coding
  ENSMUST00000161297 Usf1-006 171411326-171415737 processed_transcript
  ENSMUST00000167546 Usf1-201 171411681-171418743 protein_coding
  ENSMUST00000171362 Usf1-202 171419033-171420352 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000001284ENSMUST00000159371ENSMUST00000160335ENSMUST00000160486ENSMUST00000161241ENSMUST00000167546ENSMUST00000171362
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000001284 8.883±2.38 12.541±2.43 6.189±0.40 N/A 11.897±0.88 N/A 3.763±0.55 7.146±0.71 4.888±1.38 13.639±1.35 N/A 16.028±3.70 6.251±1.16 2.635±0.31
ENSMUST00000159371 N/A N/A 10.298±0.00 31.832±9.40 N/A N/A 4.337±0.32 N/A 5.511±0.89 N/A N/A 9.570±0.00 12.362±0.92 2.620±1.19
ENSMUST00000160335 14.915±3.20 23.410±3.42 9.326±0.60 47.110±1.39 17.707±4.81 N/A 8.509±0.40 13.926±0.68 8.296±2.14 24.864±3.71 5.216±0.29 38.856±8.08 12.724±0.00 3.844±0.94
ENSMUST00000160486 N/A 4.678±0.00 N/A N/A 7.708±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.328±0.07
ENSMUST00000161241 N/A N/A 3.590±0.00 N/A N/A N/A N/A N/A 2.037±0.60 N/A N/A 6.961±1.84 3.754±1.66 N/A
ENSMUST00000167546 13.365±2.71 10.761±2.95 10.547±0.68 24.999±7.23 9.469±3.67 19.632±2.05 5.785±2.15 10.048±1.09 5.466±0.83 15.534±0.37 7.207±1.50 19.263±3.75 12.451±2.51 2.932±1.30
ENSMUST00000171362 N/A N/A N/A N/A N/A 321.283±10.41 N/A 45.328±2.92 33.222±3.84 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00026D CIL_00026D_0002 CGP 1:171411313-171464603

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000432 IMP positive regulation of transcription from RNA polymerase II promoter by glucose
GO:0001666 IEA response to hypoxia
GO:0003674 ND molecular_function
GO:0003677 IDA DNA binding
GO:0003690 IEA double-stranded DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0003705 IEA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005667 IC transcription factor complex
GO:0005737 IEA cytoplasm
GO:0005739 IDA mitochondrion
GO:0006006 IEA glucose metabolic process
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0008150 ND biological_process
GO:0009411 IMP response to UV
GO:0019086 IEA late viral transcription
GO:0019899 IEA enzyme binding
GO:0019901 IEA protein kinase binding
GO:0032869 IEA cellular response to insulin stimulus
GO:0042803 IEA protein homodimerization activity
GO:0042826 IEA histone deacetylase binding
GO:0043425 IEA bHLH transcription factor binding
GO:0043565 IEA sequence-specific DNA binding
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0046982 IEA protein heterodimerization activity
GO:0046983 IEA protein dimerization activity
GO:0055088 IMP lipid homeostasis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014463 usf1l upstream transcription factor 1, like protein_coding Danio_rerio
ENSDARG00000041689 usf1 upstream transcription factor 1 protein_coding Danio_rerio
ENSG00000158773 USF1 upstream transcription factor 1 protein_coding Homo_sapiens

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