C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox C9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000001706 Hoxc9-001 ENSMUSG00000036139 10090 + 15:102977032-102985099 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000001706
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000001706 3.001±1.23 0.140±0.05 0.008±0.00 8.764±5.67 0.093±0.03 0.015±0.00 2.707±1.17 0.038±0.02 0.015±0.00 1.209±0.24 6.230±2.35 0.198±0.16 1.219±0.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B4 CIL_0009B4_0002 VISTA 15:102394217-102994945
CIL_0007SU CIL_0007SU_0002 VISTA 15:102699781-103302958
CIL_00084M CIL_00084M_0002 VISTA 15:102713812-103314964
CIL_0002TN CIL_0002TN_0003 CGP 15:102976439-102994111

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0009952 IGI anterior/posterior pattern specification
GO:0043565 IEA sequence-specific DNA binding
GO:0048704 IMP embryonic skeletal system morphogenesis
GO:0048706 IGI embryonic skeletal system development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000303450 HOXC9-001 protein_coding Homo_sapiens 0 1784
ENST00000504557 HOXC9-003 processed_transcript Homo_sapiens 0 619
ENST00000508190 HOXC9-002 protein_coding Homo_sapiens 0 1766

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