C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phenylalanyl-tRNA synthetase, alpha subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000003906 Farsa-001 ENSMUSG00000003808 10090 + 8:84856989-84869257 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000003906
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000003906 9.483±1.28 16.714±1.80 10.222±3.48 20.341±11.11 7.919±0.69 9.511±3.11 6.970±1.54 10.149±2.19 21.535±14.85 8.578±0.30 8.637±1.35 17.914±6.59 24.559±9.76 12.476±2.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZV CIL_0007ZV_0002 VISTA 8:84428902-85032705
CIL_0007VV CIL_0007VV_0002 VISTA 8:84441926-85045230
CIL_0006LV CIL_0006LV_0002 CGP 8:84856989-84888221

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000049 IEA tRNA binding
GO:0004826 IEA phenylalanine-tRNA ligase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0006432 IEA phenylalanyl-tRNA aminoacylation
GO:0008150 ND biological_process
GO:0016020 IEA membrane
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000314606 FARSA-001 protein_coding Homo_sapiens 0 1637
ENST00000423140 FARSA-002 protein_coding Homo_sapiens 0 1013
ENST00000586146 FARSA-004 nonsense_mediated_decay Homo_sapiens 0 876
ENST00000586280 FARSA-009 retained_intron Homo_sapiens 0 536
ENST00000587488 FARSA-010 protein_coding Homo_sapiens 0 448
ENST00000587981 FARSA-007 protein_coding Homo_sapiens 0 433
ENST00000588025 FARSA-006 protein_coding Homo_sapiens 0 1628
ENST00000588965 FARSA-003 retained_intron Homo_sapiens 0 1099
ENST00000592662 FARSA-008 retained_intron Homo_sapiens 0 758
ENST00000593021 FARSA-005 protein_coding Homo_sapiens 0 1070

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