C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: breast carcinoma amplified sequence 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000005830 Bcas2-001 ENSMUSG00000005687 10090 + 3:103171655-103179152 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000005830
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000005830 10.503±3.54 35.012±4.33 25.660±2.99 35.516±9.97 11.281±5.87 16.562±4.37 14.327±1.99 17.152±3.29 40.760±32.55 13.761±1.05 15.034±2.29 16.225±6.12 30.959±8.81 51.596±17.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003RY CIL_0003RY_0002 CGP 3:103102604-103179166
CIL_0006WV CIL_0006WV_0002 CGP 3:103171655-103358768

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 ISS mRNA splicing, via spliceosome
GO:0000974 ISS Prp19 complex
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005662 ISS DNA replication factor A complex
GO:0005681 IEA spliceosomal complex
GO:0008150 ND biological_process
GO:0030054 IEA cell junction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000369541 BCAS2-001 protein_coding Homo_sapiens 0 839
ENST00000416374 BCAS2P3-001 processed_pseudogene Homo_sapiens 0 427
ENST00000425064 BCAS2P2-001 processed_pseudogene Homo_sapiens 0 691
ENST00000485021 BCAS2-002 processed_transcript Homo_sapiens 0 508

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