C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006WV_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000043631-ENSDARG00000016181 CGP 7955 8:11690063-11750361
GeneTranscriptPositionBiotype
ENSDARG00000016181 (trim33)
tripartite motif-containing 33 		ENSDART00000020116 (trim33-001) 11702090-11750360 protein_coding
ENSDART00000111005 (trim33-201) 11702113-11750360 protein_coding
ENSDART00000139603 (trim33-002) 11744838-11750361 protein_coding
ENSDARG00000043631 (bcas2)
breast carcinoma amplified sequence 2 		ENSDART00000064066 (bcas2-001) 11690063-11698066 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0006WV_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000005687-ENSMUSG00000033014 CGP 10090 3:103171655-103358768
GeneTranscriptPositionBiotype
ENSMUSG00000005687 (Bcas2)
breast carcinoma amplified sequence 2 		ENSMUST00000005830 (Bcas2-001) 103171655-103179152 protein_coding
ENSMUST00000135017 (Bcas2-002) 103171772-103179166 nonsense_mediated_decay
ENSMUST00000136937 (Bcas2-003) 103171703-103178825 retained_intron
ENSMUST00000139489 (Bcas2-004) 103171749-103178827 retained_intron
ENSMUST00000147042 (Bcas2-006) 103171785-103174547 retained_intron
ENSMUST00000155520 (Bcas2-005) 103171762-103178447 nonsense_mediated_decay
ENSMUSG00000033014 (Trim33)
tripartite motif-containing 33 		ENSMUST00000029444 (Trim33-201) 103279293-103358768 protein_coding
ENSMUST00000106860 (Trim33-202) 103279293-103358768 protein_coding
ENSMUSG00000054379 (2410024N13Rik)
RIKEN cDNA 2410024N13 gene 		ENSMUST00000090704 (2410024N13Rik-201) 103198226-103198975 pseudogene
ENSMUSG00000098153 (Gm27024)
predicted gene, 27024 		ENSMUST00000182561 (Gm27024-001) 103179689-103180443 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006WV_0001ENSDARG00000016181ENSDART00000020116ENSDART00000111005ENSDART00000139603ENSDARG00000043631ENSDART00000064066CIL_0006WV_0002ENSMUSG00000005687ENSMUST00000005830ENSMUST00000135017ENSMUST00000136937ENSMUST00000139489ENSMUST00000147042ENSMUST00000155520ENSMUSG00000033014ENSMUST00000029444ENSMUST00000106860ENSMUSG00000054379ENSMUST00000090704ENSMUSG00000098153ENSMUST00000182561
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006WV_0001ENSDARG00000016181ENSDART00000020116ENSDART00000111005ENSDART00000139603ENSDARG00000043631ENSDART00000064066CIL_0006WV_0002ENSMUSG00000005687ENSMUST00000005830ENSMUST00000135017ENSMUST00000136937ENSMUST00000139489ENSMUST00000147042ENSMUST00000155520ENSMUSG00000033014ENSMUST00000029444ENSMUST00000106860ENSMUSG00000054379ENSMUST00000090704ENSMUSG00000098153ENSMUST00000182561
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000016181 ENSDART00000020116 N/A N/A N/A 7.462±0.00 N/A N/A 1.397±0.89 3.446±0.00 1.500±0.00 N/A N/A N/A N/A N/A
ENSDART00000111005 N/A N/A N/A 4.462±3.94 N/A N/A 2.159±1.27 5.656±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000139603 N/A N/A N/A 3.196±0.00 N/A N/A 1.936±1.39 6.953±2.35 N/A N/A N/A N/A N/A N/A
ENSDARG00000043631 ENSDART00000064066 N/A N/A N/A 16.749±11.07 N/A N/A 20.541±13.58 18.834±12.77 3.606±0.00 N/A 8.879±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000005687 ENSMUST00000005830 10.503±3.54 35.012±4.33 25.660±2.99 35.516±9.97 11.281±5.87 16.562±4.37 14.327±1.99 17.152±3.29 40.760±32.55 13.761±1.05 15.034±2.29 16.225±6.12 30.959±8.81 51.596±17.22
ENSMUST00000135017 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.588±0.00
ENSMUST00000136937 1.424±0.55 N/A 2.680±0.57 3.331±0.40 1.323±0.50 1.459±0.33 0.752±0.02 1.100±0.14 5.466±2.96 1.515±0.15 0.731±0.00 2.292±0.56 2.584±0.69 N/A
ENSMUST00000139489 1.763±0.73 N/A N/A 4.850±1.34 1.684±0.52 2.204±0.00 N/A N/A 0.968±0.00 2.384±0.33 N/A 1.538±0.16 N/A N/A
ENSMUST00000147042 N/A 13.878±2.03 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155520 4.143±0.81 4.905±0.00 12.744±2.56 58.130±55.25 7.166±2.77 4.964±0.36 N/A 5.301±1.73 19.259±22.36 6.621±0.34 8.124±1.97 24.955±48.02 87.470±92.33 253.367±0.00
ENSMUSG00000033014 ENSMUST00000029444 1.404±0.41 N/A 2.495±0.32 3.565±0.67 1.509±0.91 N/A 0.759±0.32 0.824±0.32 1.908±0.76 1.776±1.03 1.132±0.17 4.185±1.18 4.752±0.48 4.026±0.98
ENSMUST00000106860 2.121±1.12 3.420±0.31 1.132±0.30 4.249±1.07 3.000±1.13 2.743±0.33 1.118±0.19 2.126±0.72 1.046±0.35 2.720±0.85 0.287±0.06 4.173±0.84 2.187±0.66 1.801±0.89
ENSMUSG00000054379 ENSMUST00000090704 N/A N/A N/A 0.032±0.01 N/A 0.206±0.01 N/A N/A 0.009±0.00 N/A N/A N/A 0.060±0.04 N/A
ENSMUSG00000098153 ENSMUST00000182561 N/A N/A N/A N/A 0.096±0.00 N/A N/A N/A 0.026±0.02 N/A N/A N/A 0.015±0.00 0.072±0.02

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