C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: breast carcinoma amplified sequence 2 pseudogene 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000416374 BCAS2P3-001 ENSG00000226670 9606 + 13:79166119-79166885 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; LungENST00000416374
Transcript ID Lung
ENST00000416374 0.266±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007M3 CIL_0007M3_0001 UCNEbase 13:78239925-79269621
CIL_0002EJ CIL_0002EJ_0001 CGP 13:78614291-79406477
CIL_00088S CIL_00088S_0001 VISTA 13:78698125-79299456

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000155520 Bcas2-005 nonsense_mediated_decay Mus_musculus 0 427
ENSMUST00000005830 Bcas2-001 protein_coding Mus_musculus 0 427
ENSMUST00000135017 Bcas2-002 nonsense_mediated_decay Mus_musculus 0 372
ENSMUST00000139489 Bcas2-004 retained_intron Mus_musculus 0 340
ENSMUST00000136937 Bcas2-003 retained_intron Mus_musculus 0.0000000005 69

Loading