C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: breast carcinoma amplified sequence 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000369541 BCAS2-001 ENSG00000116752 9606 - 1:114567557-114581639 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000369541
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000369541 8.476±0.00 11.579±0.00 2.732±0.00 20.914±0.51 12.207±3.60 8.804±1.84 6.725±0.79 10.523±4.02 6.610±0.50 6.081±0.93 4.418±0.06 14.884±6.21 8.807±0.63 16.288±2.85

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000375 TAS RNA splicing, via transesterification reactions
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005662 IDA DNA replication factor A complex
GO:0005681 IDA spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008380 TAS RNA splicing
GO:0030054 IDA cell junction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000005830 Bcas2-001 protein_coding Mus_musculus 0 839
ENSMUST00000155520 Bcas2-005 nonsense_mediated_decay Mus_musculus 0 704
ENSMUST00000135017 Bcas2-002 nonsense_mediated_decay Mus_musculus 0 612
ENSMUST00000139489 Bcas2-004 retained_intron Mus_musculus 0 608
ENSMUST00000136937 Bcas2-003 retained_intron Mus_musculus 0 536
ENSMUST00000147042 Bcas2-006 retained_intron Mus_musculus 0 444

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