C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transportin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000265388 TNPO3-001 ENSG00000064419 9606 - 7:128954180-129054914 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000265388
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000265388 10.270±0.00 8.768±0.00 4.354±3.49 9.092±0.00 5.528±4.77 4.755±3.26 7.572±5.29 5.598±0.40 3.770±0.70 9.655±7.85 9.167±4.01 6.620±0.22 14.525±2.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001YB CIL_0001YB_0001 CGP 7:128937612-129055144
CIL_0001YG CIL_0001YG_0001 CGP 7:128954180-129169697

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 TAS receptor activity
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006810 IEA transport
GO:0035048 IDA splicing factor protein import into nucleus
GO:0043231 IDA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000012679 Tnpo3-001 protein_coding Mus_musculus 0 4132
ENSMUST00000115251 Tnpo3-201 protein_coding Mus_musculus 0 4017
ENSMUST00000170350 Tnpo3-002 nonsense_mediated_decay Mus_musculus 0 3864
ENSMUST00000169302 Tnpo3-007 retained_intron Mus_musculus 0 2346
ENSMUST00000170647 Tnpo3-005 protein_coding Mus_musculus 0 1219
ENSMUST00000170634 Tnpo3-009 retained_intron Mus_musculus 0 1020
ENSMUST00000164325 Tnpo3-008 retained_intron Mus_musculus 0 821
ENSMUST00000171865 Tnpo3-006 retained_intron Mus_musculus 0 309
ENSMUST00000167252 Irf5-004 protein_coding Mus_musculus 0 279
ENSMUST00000171527 Irf5-005 processed_transcript Mus_musculus 0 261
ENSMUST00000166844 Tnpo3-003 nonsense_mediated_decay Mus_musculus 0 250

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