C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 35, member C2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000017808 Slc35c2-008 ENSMUSG00000017664 10090 - 2:165276554-165287827 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000017808
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000017808 5.210±0.00 5.012±0.00 2.937±0.00 6.423±0.00 2.691±0.00 4.661±2.77 7.512±3.41 5.021±0.77 5.353±1.83 5.306±3.07 5.934±0.56 5.920±2.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007BF CIL_0007BF_0002 CGP 2:165111507-165287869
CIL_0006G4 CIL_0006G4_0002 CGP 2:165276554-165326479

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005793 ISO endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 IEA Golgi apparatus
GO:0005801 ISO cis-Golgi network
GO:0006810 IEA transport
GO:0010629 IDA negative regulation of gene expression
GO:0016021 IEA integral component of membrane
GO:0036065 IDA fucosylation
GO:0036066 IDA protein O-linked fucosylation
GO:0045747 IDA positive regulation of Notch signaling pathway
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000243896 SLC35C2-002 protein_coding Homo_sapiens 0 1345
ENST00000317734 SLC35C2-201 protein_coding Homo_sapiens 0 1345
ENST00000372227 SLC35C2-003 protein_coding Homo_sapiens 0 1345
ENST00000372230 SLC35C2-013 protein_coding Homo_sapiens 0 1345
ENST00000420518 SLC35C2-006 protein_coding Homo_sapiens 0 414
ENST00000424568 SLC35C2-007 protein_coding Homo_sapiens 0 420
ENST00000426556 RP11-716A19.3-001 processed_pseudogene Homo_sapiens 0 577
ENST00000480329 SLC35C2-009 processed_transcript Homo_sapiens 0 658
ENST00000481809 SLC35C2-011 processed_transcript Homo_sapiens 0 357
ENST00000484318 SLC35C2-012 processed_transcript Homo_sapiens 0 704
ENST00000487729 SLC35C2-010 processed_transcript Homo_sapiens 0 688
ENST00000493599 SLC35C2-004 processed_transcript Homo_sapiens 0 396
ENST00000543605 SLC35C2-001 protein_coding Homo_sapiens 0 771

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