C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 35 (GDP-fucose transporter), member C2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000372230 SLC35C2-013 ENSG00000080189 9606 - 20:46349528-46364395 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000372230
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000372230 4.972±0.00 2.011±0.06 5.051±1.63 3.359±1.33 1.634±1.23 4.639±0.00 4.653±3.16 6.923±0.00 9.992±6.12 13.568±2.82 4.141±0.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007BF CIL_0007BF_0001 CGP 20:46173733-46364458
CIL_0006G4 CIL_0006G4_0001 CGP 20:46345980-46432985

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005793 IDA endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 IEA Golgi apparatus
GO:0005801 IDA cis-Golgi network
GO:0006810 IEA transport
GO:0016021 IEA integral component of membrane
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109298 Slc35c2-014 protein_coding Mus_musculus 0 1345
ENSMUST00000109299 Slc35c2-013 protein_coding Mus_musculus 0 1345
ENSMUST00000109300 Slc35c2-012 protein_coding Mus_musculus 0 1345
ENSMUST00000017808 Slc35c2-008 protein_coding Mus_musculus 0 1345
ENSMUST00000132270 Slc35c2-004 nonsense_mediated_decay Mus_musculus 0 1096
ENSMUST00000154608 Slc35c2-007 retained_intron Mus_musculus 0 861
ENSMUST00000156134 Slc35c2-010 protein_coding Mus_musculus 0 702
ENSMUST00000133961 Slc35c2-009 protein_coding Mus_musculus 0 702
ENSMUST00000129210 Slc35c2-002 protein_coding Mus_musculus 0 599
ENSMUST00000155289 Slc35c2-003 protein_coding Mus_musculus 0 510
ENSMUST00000131409 Slc35c2-016 protein_coding Mus_musculus 0 420
ENSMUST00000129336 Slc35c2-005 protein_coding Mus_musculus 0 414
ENSMUST00000125550 Slc35c2-015 retained_intron Mus_musculus 0 302
ENSMUST00000145301 Slc35c2-006 nonsense_mediated_decay Mus_musculus 0 283
ENSMUST00000147247 Slc35c2-011 retained_intron Mus_musculus 0 217

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