C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000019791 Sema6a-001 ENSMUSG00000019647 10090 - 18:47245254-47368830 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainHeartLiverMuscleOvaryPlacentaTestisENSMUST00000019791
Transcript ID Adipose Bladder Brain Heart Liver Muscle Ovary Placenta Testis
ENSMUST00000019791 0.463±0.08 0.712±0.00 4.665±2.14 0.816±0.00 0.431±0.04 0.447±0.11 0.740±0.37 2.022±0.76 0.064±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004L9 CIL_0004L9_0002 CGP 18:46958862-47368870

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001764 IMP neuron migration
GO:0004888 IMP transmembrane signaling receptor activity
GO:0005515 IPI protein binding
GO:0005886 TAS plasma membrane
GO:0005887 IDA integral component of plasma membrane
GO:0006915 NAS apoptotic process
GO:0007166 IDA cell surface receptor signaling pathway
GO:0007411 NAS axon guidance
GO:0016020 NAS membrane
GO:0030215 IPI semaphorin receptor binding
GO:0030424 NAS axon
GO:0051642 IMP centrosome localization
GO:0071526 IMP semaphorin-plexin signaling pathway
GO:2001224 IMP positive regulation of neuron migration

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000257414 SEMA6A-002 protein_coding Homo_sapiens 0 2495
ENST00000343348 SEMA6A-001 protein_coding Homo_sapiens 0 4558
ENST00000502996 SEMA6A-011 processed_transcript Homo_sapiens 0.00001 55
ENST00000503402 SEMA6A-012 retained_intron Homo_sapiens 0 424
ENST00000503865 SEMA6A-006 protein_coding Homo_sapiens 0 1744
ENST00000503962 SEMA6A-010 processed_transcript Homo_sapiens 0 706
ENST00000506114 SEMA6A-014 processed_transcript Homo_sapiens 0 675
ENST00000509665 SEMA6A-009 protein_coding Homo_sapiens 0 556
ENST00000510263 SEMA6A-003 protein_coding Homo_sapiens 0 4023
ENST00000513137 SEMA6A-005 protein_coding Homo_sapiens 0 2030
ENST00000514316 SEMA6A-015 processed_transcript Homo_sapiens 0 401
ENST00000515009 SEMA6A-008 protein_coding Homo_sapiens 0 697
ENST00000515129 SEMA6A-004 protein_coding Homo_sapiens 0 1866

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