C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATPase, Ca++ transporting, plasma membrane 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020107 Atp2b1-201 ENSMUSG00000019943 10090 + 10:98915152-99026143 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020107
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020107 7.327±3.88 3.761±1.20 12.755±0.70 12.067±1.91 5.654±0.84 16.967±2.87 1.794±0.71 3.407±1.04 2.596±1.47 10.360±0.60 7.122±0.78 5.184±1.44 9.232±2.64 1.159±0.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008GQ CIL_0008GQ_0002 VISTA 10:98383082-98985589

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005388 IEA calcium-transporting ATPase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005887 TAS integral component of plasma membrane
GO:0006816 TAS calcium ion transport
GO:0008152 IEA metabolic process
GO:0046872 IEA metal ion binding
GO:0070062 IEA extracellular vesicular exosome
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261173 ATP2B1-201 protein_coding Homo_sapiens 0 6580
ENST00000263519 ATP2B3-201 protein_coding Homo_sapiens 0 1223
ENST00000341360 ATP2B4-002 protein_coding Homo_sapiens 0 1203
ENST00000349466 ATP2B3-002 protein_coding Homo_sapiens 0 1223
ENST00000357681 ATP2B4-001 protein_coding Homo_sapiens 0 1229
ENST00000359142 ATP2B1-002 protein_coding Homo_sapiens 0 4697
ENST00000359149 ATP2B3-006 protein_coding Homo_sapiens 0 1173
ENST00000367218 ATP2B4-201 protein_coding Homo_sapiens 0 1203
ENST00000370186 ATP2B3-001 protein_coding Homo_sapiens 0 337
ENST00000393164 ATP2B1-003 protein_coding Homo_sapiens 0 4026
ENST00000393842 ATP2B3-004 protein_coding Homo_sapiens 0 337
ENST00000428670 ATP2B1-001 protein_coding Homo_sapiens 0 6719
ENST00000549585 ATP2B1-006 retained_intron Homo_sapiens 0 769
ENST00000549727 ATP2B1-007 retained_intron Homo_sapiens 0 948
ENST00000550716 ATP2B1-004 protein_coding Homo_sapiens 0 518
ENST00000551009 ATP2B1-008 retained_intron Homo_sapiens 0 577

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