C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: nuclear factor I/X (CCAAT-binding transcription factor)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000586873 NFIX-011 ENSG00000008441 9606 + 19:13024627-13025510 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VV CIL_0007VV_0001 VISTA 19:12752697-13356541
CIL_0007ZV CIL_0007ZV_0001 VISTA 19:12767682-13372012
CIL_0001IU CIL_0001IU_0002 CGP 19:12965159-13098796
CIL_0004F9 CIL_0004F9_0001 CGP 19:12995608-13103161

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0006260 IEA DNA replication
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000126806 Nfix-005 protein_coding Mus_musculus 0 795
ENSMUST00000109762 Nfix-004 protein_coding Mus_musculus 0 795
ENSMUST00000099070 Nfix-002 protein_coding Mus_musculus 0 795
ENSMUST00000076715 Nfix-003 protein_coding Mus_musculus 0 795
ENSMUST00000109764 Nfix-001 protein_coding Mus_musculus 0 795
ENSDART00000121795 nfixa-201 protein_coding Danio_rerio 0 508
ENSDART00000135861 nfixa-001 protein_coding Danio_rerio 0 508
ENSDART00000044670 nfixb-201 protein_coding Danio_rerio 0 503
ENSDART00000090235 nfixb-202 protein_coding Danio_rerio 0 503
ENSDART00000139001 nfixb-001 protein_coding Danio_rerio 0 503
ENSMUST00000078185 Nfic-005 protein_coding Mus_musculus 0 486
ENSMUST00000117966 Nfic-004 protein_coding Mus_musculus 0 486
ENSMUST00000020461 Nfic-002 protein_coding Mus_musculus 0 486
ENSMUST00000105321 Nfic-001 protein_coding Mus_musculus 0 486
ENSDART00000090237 nfia-202 protein_coding Danio_rerio 0 475
ENSDART00000063467 nfia-201 protein_coding Danio_rerio 0 475
ENSDART00000090242 nfia-203 protein_coding Danio_rerio 0 475
ENSDART00000138382 nfia-002 protein_coding Danio_rerio 0 475
ENSDART00000138233 nfia-001 protein_coding Danio_rerio 0 475

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