C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
||||||
| Description: | nuclear factor I/X (CCAAT-binding transcription factor) | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000585575  |
NFIX-006 |
ENSG00000008441 |
9606 | + |
19:13024032-13094649  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0007VV | CIL_0007VV_0001 | VISTA | 19:12752697-13356541 |
| CIL_0007ZV | CIL_0007ZV_0001 | VISTA | 19:12767682-13372012 |
| CIL_0001IU | CIL_0001IU_0002 | CGP | 19:12965159-13098796 |
| CIL_0004F9 | CIL_0004F9_0001 | CGP | 19:12995608-13103161 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0000122 | IDA | negative regulation of transcription from RNA polymerase II promoter |
| GO:0003677 | IEA | DNA binding |
| GO:0003700 | IEA:TAS | sequence-specific DNA binding transcription factor activity |
| GO:0003705 | TAS | RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity |
| GO:0005622 | IEA | intracellular |
| GO:0005634 | IEA | nucleus |
| GO:0006260 | IEA | DNA replication |
| GO:0006351 | IEA | transcription, DNA-templated |
| GO:0006355 | IEA | regulation of transcription, DNA-templated |
| GO:0006366 | TAS | transcription from RNA polymerase II promoter |
| GO:0045944 | IDA | positive regulation of transcription from RNA polymerase II promoter |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000109764
|
Nfix-001 | protein_coding | Mus_musculus | 0 | 2366 |
|
ENSMUST00000126806
|
Nfix-005 | protein_coding | Mus_musculus | 0 | 2281 |
|
ENSMUST00000099070
|
Nfix-002 | protein_coding | Mus_musculus | 0 | 1916 |
|
ENSMUST00000076715
|
Nfix-003 | protein_coding | Mus_musculus | 0 | 1441 |
|
ENSMUST00000109762
|
Nfix-004 | protein_coding | Mus_musculus | 0 | 1430 |
|
ENSDART00000090235
|
nfixb-202 | protein_coding | Danio_rerio | 0 | 736 |
|
ENSDART00000139001
|
nfixb-001 | protein_coding | Danio_rerio | 0 | 726 |
|
ENSDART00000044670
|
nfixb-201 | protein_coding | Danio_rerio | 0 | 713 |
|
ENSDART00000121795
|
nfixa-201 | protein_coding | Danio_rerio | 0 | 688 |
|
ENSDART00000135861
|
nfixa-001 | protein_coding | Danio_rerio | 0 | 531 |
|
ENSMUST00000117966
|
Nfic-004 | protein_coding | Mus_musculus | 0 | 503 |
|
ENSMUST00000078185
|
Nfic-005 | protein_coding | Mus_musculus | 0 | 499 |
|
ENSMUST00000020461
|
Nfic-002 | protein_coding | Mus_musculus | 0 | 499 |
|
ENSMUST00000105321
|
Nfic-001 | protein_coding | Mus_musculus | 0 | 499 |
|
ENSDART00000090237
|
nfia-202 | protein_coding | Danio_rerio | 0 | 488 |
|
ENSDART00000063467
|
nfia-201 | protein_coding | Danio_rerio | 0 | 488 |
|
ENSDART00000090242
|
nfia-203 | protein_coding | Danio_rerio | 0 | 488 |
|
ENSDART00000138233
|
nfia-001 | protein_coding | Danio_rerio | 0 | 483 |
|
ENSDART00000138382
|
nfia-002 | protein_coding | Danio_rerio | 0 | 481 |
|
ENSMUST00000132236
|
Nfix-006 | retained_intron | Mus_musculus | 2.8026e-45 | 187 |
