C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear factor I/X (CCAAT-binding transcription factor)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000397661 NFIX-001 ENSG00000008441 9606 + 19:12995608-13096201 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENST00000397661
Transcript ID Brain Ovary Placenta Testis
ENST00000397661 0.852±0.00 16.123±12.97 2.153±0.34 3.847±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VV CIL_0007VV_0001 VISTA 19:12752697-13356541
CIL_0007ZV CIL_0007ZV_0001 VISTA 19:12767682-13372012
CIL_0001IU CIL_0001IU_0002 CGP 19:12965159-13098796
CIL_0004F9 CIL_0004F9_0001 CGP 19:12995608-13103161

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0003700 IEA:TAS sequence-specific DNA binding transcription factor activity
GO:0003705 TAS RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0006260 IEA DNA replication
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0021549 IEA cerebellum development
GO:0021680 IEA cerebellar Purkinje cell layer development
GO:0021707 IEA cerebellar granule cell differentiation
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048708 IEA astrocyte differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000099070 Nfix-002 protein_coding Mus_musculus 0 2401
ENSMUST00000126806 Nfix-005 protein_coding Mus_musculus 0 1964
ENSMUST00000109764 Nfix-001 protein_coding Mus_musculus 0 1916
ENSMUST00000076715 Nfix-003 protein_coding Mus_musculus 0 1628
ENSMUST00000109762 Nfix-004 protein_coding Mus_musculus 0 1426
ENSDART00000090235 nfixb-202 protein_coding Danio_rerio 0 736
ENSDART00000139001 nfixb-001 protein_coding Danio_rerio 0 730
ENSDART00000044670 nfixb-201 protein_coding Danio_rerio 0 713
ENSDART00000121795 nfixa-201 protein_coding Danio_rerio 0 713
ENSDART00000135861 nfixa-001 protein_coding Danio_rerio 0 564
ENSMUST00000078185 Nfic-005 protein_coding Mus_musculus 0 521
ENSMUST00000020461 Nfic-002 protein_coding Mus_musculus 0 521
ENSMUST00000105321 Nfic-001 protein_coding Mus_musculus 0 521
ENSDART00000090237 nfia-202 protein_coding Danio_rerio 0 507
ENSDART00000090242 nfia-203 protein_coding Danio_rerio 0 507
ENSDART00000063467 nfia-201 protein_coding Danio_rerio 0 503
ENSDART00000138233 nfia-001 protein_coding Danio_rerio 0 501
ENSMUST00000117966 Nfic-004 protein_coding Mus_musculus 0 499
ENSDART00000138382 nfia-002 protein_coding Danio_rerio 0 477
ENSMUST00000132236 Nfix-006 retained_intron Mus_musculus 0 222

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