C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: period circadian clock 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021271 Per1-001 ENSMUSG00000020893 10090 + 11:69098948-69109960 protein_coding

Mus musculus EnsemblGRCm38

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021271
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021271 5.214±3.48 9.239±3.40 8.866±0.73 3.464±0.06 5.560±2.47 2.394±1.18 3.478±1.93 2.163±0.77 1.403±1.38 11.869±7.25 7.218±2.81 3.844±2.52 2.201±0.65 29.161±1.17

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000976 IDA transcription regulatory region sequence-specific DNA binding
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000989 IDA transcription factor binding transcription factor activity
GO:0002028 IMP regulation of sodium ion transport
GO:0004871 IEA signal transducer activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IEA cytoplasm
GO:0005829 TAS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0007165 IEA signal transduction
GO:0007623 TAS circadian rhythm
GO:0008134 IPI transcription factor binding
GO:0009416 IEP response to light stimulus
GO:0010608 IMP posttranscriptional regulation of gene expression
GO:0019900 IPI kinase binding
GO:0031490 IDA chromatin DNA binding
GO:0031625 IEA ubiquitin protein ligase binding
GO:0032922 ISS circadian regulation of gene expression
GO:0042634 ISS regulation of hair cycle
GO:0042752 IMP regulation of circadian rhythm
GO:0043124 ISS negative regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043153 IMP entrainment of circadian clock by photoperiod
GO:0043966 IDA histone H3 acetylation
GO:0043967 IEA histone H4 acetylation
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:0046329 ISS negative regulation of JNK cascade
GO:0051591 IDA response to cAMP
GO:0070888 IEA E-box binding
GO:0070932 IMP histone H3 deacetylation
GO:0097167 IMP circadian regulation of translation
GO:1900015 ISS regulation of cytokine production involved in inflammatory response
GO:1900744 ISS regulation of p38MAPK cascade
GO:2000323 IMP negative regulation of glucocorticoid receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000079459 per1a-201 protein_coding Danio_rerio 0.00000001 68
ENSDART00000100468 per1a-001 protein_coding Danio_rerio 0.00000001 68
ENST00000254657 PER2-001 protein_coding Homo_sapiens 2e-16 94
ENST00000317276 PER1-001 protein_coding Homo_sapiens 0 4896
ENST00000354903 PER1-002 protein_coding Homo_sapiens 0 2977
ENST00000577253 PER1-008 protein_coding Homo_sapiens 0 385
ENST00000577424 PER1-013 retained_intron Homo_sapiens 8e-27 124
ENST00000578089 PER1-015 processed_transcript Homo_sapiens 0 418
ENST00000578223 PER1-011 retained_intron Homo_sapiens 0 693
ENST00000578950 PER1-018 retained_intron Homo_sapiens 0 342
ENST00000579065 PER1-004 retained_intron Homo_sapiens 0 1118
ENST00000581082 PER1-005 protein_coding Homo_sapiens 0 3997
ENST00000581395 PER1-003 nonsense_mediated_decay Homo_sapiens 0 2109
ENST00000581703 PER1-009 protein_coding Homo_sapiens 0 592
ENST00000582719 PER1-006 nonsense_mediated_decay Homo_sapiens 0 3129
ENST00000583559 PER1-016 protein_coding Homo_sapiens 0 427
ENST00000583677 PER1-007 retained_intron Homo_sapiens 0 348
ENST00000584202 PER1-010 protein_coding Homo_sapiens 0 479
ENST00000585095 PER1-014 retained_intron Homo_sapiens 0 219
ENST00000585284 PER1-019 retained_intron Homo_sapiens 0 597

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