C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: period circadian clock 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000317276 PER1-001 ENSG00000179094 9606 - 17:8140472-8152435 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000317276
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000317276 39.595±0.00 19.871±0.00 2.166±0.00 12.728±0.00 8.944±0.00 11.160±0.00 2.592±0.00 6.503±0.00 11.139±8.57 10.914±8.23 24.407±12.83 10.572±4.46 12.131±2.29

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0000976 IEA transcription regulatory region sequence-specific DNA binding
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000989 ISS transcription factor binding transcription factor activity
GO:0002028 ISS regulation of sodium ion transport
GO:0004871 IEA signal transducer activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007165 IEA signal transduction
GO:0007623 IEP circadian rhythm
GO:0008134 IEA transcription factor binding
GO:0009416 IEA response to light stimulus
GO:0009649 TAS entrainment of circadian clock
GO:0010608 ISS posttranscriptional regulation of gene expression
GO:0019900 IPI kinase binding
GO:0031490 ISS chromatin DNA binding
GO:0031625 IPI ubiquitin protein ligase binding
GO:0032922 IDA circadian regulation of gene expression
GO:0042634 IMP regulation of hair cycle
GO:0042752 ISS regulation of circadian rhythm
GO:0043124 ISS negative regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043153 ISS entrainment of circadian clock by photoperiod
GO:0043966 IDA histone H3 acetylation
GO:0043967 IDA histone H4 acetylation
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0046329 ISS negative regulation of JNK cascade
GO:0051591 IEA response to cAMP
GO:0070888 IDA E-box binding
GO:0070932 ISS histone H3 deacetylation
GO:0097167 ISS circadian regulation of translation
GO:1900015 ISS regulation of cytokine production involved in inflammatory response
GO:1900744 ISS regulation of p38MAPK cascade
GO:2000323 ISS negative regulation of glucocorticoid receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000166748 Per1-201 protein_coding Mus_musculus 0 4896
ENSMUST00000021271 Per1-001 protein_coding Mus_musculus 0 4896
ENSMUST00000102605 Per1-002 protein_coding Mus_musculus 0 3954
ENSMUST00000101004 Per1-003 protein_coding Mus_musculus 0 3142
ENSMUST00000142392 Per1-004 nonsense_mediated_decay Mus_musculus 0 2109
ENSMUST00000132462 Per1-005 protein_coding Mus_musculus 0 449
ENSDART00000079459 per1a-201 protein_coding Danio_rerio 0.00000004 66
ENSDART00000100468 per1a-001 protein_coding Danio_rerio 0.00000004 66

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