C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sine oculis-related homeobox 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021519 Six6-001 ENSMUSG00000021099 10090 + 12:72939892-72944899 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainENSMUST00000021519
Transcript ID Brain
ENSMUST00000021519 0.384±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008MW CIL_0008MW_0002 VISTA 12:72750612-73352572
CIL_0000S6 CIL_0000S6_0002 CGP 12:72761211-72940774
CIL_0000RZ CIL_0000RZ_0002 CGP 12:72881109-72944899
CIL_00036B CIL_00036B_0003 CGP 12:72939892-73053887

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001205 IDA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0007275 IEA multicellular organismal development
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000030646 six6a-001 protein_coding Danio_rerio 0 457
ENSDART00000111763 six6a-002 protein_coding Danio_rerio 0 457
ENST00000327720 SIX6-001 protein_coding Homo_sapiens 0 1014

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