C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: papilin, proteoglycan-like sulfated glycoprotein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021646 Papln-002 ENSMUSG00000021223 10090 + 12:83763654-83792355 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021646
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021646 3.873±0.02 2.058±0.48 0.341±0.06 0.171±0.07 13.713±4.32 1.706±0.76 3.593±0.88 0.902±0.19 0.968±0.49 0.614±0.09 0.366±0.00 5.171±2.67 1.108±0.92 2.611±0.44

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008P0 CIL_0008P0_0002 VISTA 12:83418739-84022790
CIL_0001TQ CIL_0001TQ_0002 CGP 12:83688203-83792382
CIL_0001TR CIL_0001TR_0002 CGP 12:83763634-83921934

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004222 IEA metalloendopeptidase activity
GO:0004867 IEA serine-type endopeptidase inhibitor activity
GO:0005604 IDA basement membrane
GO:0006508 IEA proteolysis
GO:0008270 IEA zinc ion binding
GO:0010951 IEA negative regulation of endopeptidase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216658 PAPLN-004 nonsense_mediated_decay Homo_sapiens 0 1543
ENST00000340738 PAPLN-001 protein_coding Homo_sapiens 0 1978
ENST00000554301 PAPLN-002 protein_coding Homo_sapiens 0 2641
ENST00000554527 PAPLN-013 retained_intron Homo_sapiens 0 359
ENST00000555123 PAPLN-007 nonsense_mediated_decay Homo_sapiens 0 614
ENST00000555445 PAPLN-003 protein_coding Homo_sapiens 0 1537
ENST00000555700 PAPLN-008 retained_intron Homo_sapiens 0 880
ENST00000557061 PAPLN-009 nonsense_mediated_decay Homo_sapiens 0 1146
ENST00000559759 PAPLN-014 protein_coding Homo_sapiens 0 209

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