C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 26
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000438737 RBM26-004 ENSG00000139746 9606 - 13:79319954-79406215 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonHeartLiverMuscleOvaryPlacentaENST00000438737
Transcript ID Adipose Brain Colon Heart Liver Muscle Ovary Placenta
ENST00000438737 2.321±0.00 4.002±0.00 4.266±0.00 1.005±0.37 2.113±0.00 1.717±0.00 4.654±0.00 0.569±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002EJ CIL_0002EJ_0001 CGP 13:78614291-79406477
CIL_0002EH CIL_0002EH_0001 CGP 13:79311824-79556075

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0006397 IEA mRNA processing
GO:0010923 IDA negative regulation of phosphatase activity
GO:0044822 IDA poly(A) RNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022715 Rbm26-007 protein_coding Mus_musculus 0 4654
ENSMUST00000163545 Rbm26-006 protein_coding Mus_musculus 0 4458
ENSMUST00000163499 Rbm26-002 protein_coding Mus_musculus 0 4180
ENSMUST00000100327 Rbm26-001 protein_coding Mus_musculus 0 2983
ENSMUST00000172122 Rbm26-004 protein_coding Mus_musculus 0 760
ENSDART00000114086 RBM26-202 protein_coding Danio_rerio 2e-40 172
ENSDART00000066084 RBM26-201 protein_coding Danio_rerio 3e-34 152

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