C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: keratin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023712 Krt2-001 ENSMUSG00000064201 10090 - 15:101810689-101818169 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonLiverMuscleOvaryPlacentaTestisENSMUST00000023712
Transcript ID Adipose Brain Colon Liver Muscle Ovary Placenta Testis
ENSMUST00000023712 0.062±0.01 0.412±0.40 0.036±0.01 0.010±0.00 0.037±0.00 0.015±0.00 0.016±0.01 0.021±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00033Q CIL_00033Q_0011 CGP 15:101793308-101818169
CIL_00033Q CIL_00033Q_0012 CGP 15:101810689-101850786

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005198 IEA structural molecule activity
GO:0005575 ND cellular_component
GO:0005615 IEA extracellular space
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0008150 ND biological_process
GO:0016020 IEA membrane
GO:0031424 IEA keratinization
GO:0032980 IEA keratinocyte activation
GO:0043616 IEA keratinocyte proliferation
GO:0045095 IEA keratin filament
GO:0045111 IEA intermediate filament cytoskeleton
GO:0051546 IEA keratinocyte migration
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000224237 VIM-001 protein_coding Homo_sapiens 0.000000004 68
ENST00000267119 KRT71-001 protein_coding Homo_sapiens 0 281
ENST00000305620 KRT74-001 protein_coding Homo_sapiens 0 287
ENST00000305748 KRT73-001 protein_coding Homo_sapiens 0 331
ENST00000309680 KRT2-001 protein_coding Homo_sapiens 0.000000000000004 88
ENST00000341809 KRT77-001 protein_coding Homo_sapiens 0 359
ENST00000409686 KRT8P11-001 processed_pseudogene Homo_sapiens 3e-20 104
ENST00000441609 KRT8P44-001 processed_pseudogene Homo_sapiens 1e-23 115
ENST00000469543 VIM-003 nonsense_mediated_decay Homo_sapiens 0.0000003 62
ENST00000487938 VIM-002 nonsense_mediated_decay Homo_sapiens 0.000000005 68
ENST00000544301 VIM-201 protein_coding Homo_sapiens 0.000000005 68
ENST00000546934 KRT73-002 retained_intron Homo_sapiens 0 241
ENST00000549343 KRT74-003 protein_coding Homo_sapiens 0 195
ENST00000550729 KRT128P-001 unprocessed_pseudogene Homo_sapiens 1e-19 100
ENST00000552855 KRT73-003 protein_coding Homo_sapiens 0 213
ENST00000553168 KRT77-002 nonsense_mediated_decay Homo_sapiens 0 283

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