C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: keratin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000309680 KRT2-001 ENSG00000172867 9606 - 12:52644558-52652164 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastKidneyLiverOvaryTestisENST00000309680
Transcript ID Adipose Bladder Brain Breast Kidney Liver Ovary Testis
ENST00000309680 2.268±0.00 0.073±0.00 0.014±0.00 0.045±0.00 0.387±0.00 0.128±0.00 0.040±0.02 0.024±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00033Q CIL_00033Q_000J CGP 12:52607570-52652164
CIL_00033Q CIL_00033Q_000G CGP 12:52644558-52680407

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005200 TAS structural constituent of cytoskeleton
GO:0005615 IDA extracellular space
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005794 IDA Golgi apparatus
GO:0005882 TAS:IEA intermediate filament
GO:0008544 TAS epidermis development
GO:0016020 IDA membrane
GO:0031424 IDA keratinization
GO:0032980 IDA keratinocyte activation
GO:0043616 IDA keratinocyte proliferation
GO:0045095 IEA keratin filament
GO:0045111 IDA intermediate filament cytoskeleton
GO:0051546 IDA keratinocyte migration
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000087996 Krt77-001 protein_coding Mus_musculus 0 420
ENSMUST00000023797 Krt4-201 protein_coding Mus_musculus 0 396
ENSMUST00000042957 Krt75-001 protein_coding Mus_musculus 0 353
ENSMUST00000023720 Krt84-201 protein_coding Mus_musculus 7e-18 97
ENSMUST00000023712 Krt2-001 protein_coding Mus_musculus 0.000000000000004 88

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