C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: hydroxysteroid (17-beta) dehydrogenase 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025385 Hsd17b4-001 ENSMUSG00000024507 10090 + 18:50128201-50196269 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025385
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025385 33.288±9.75 21.348±2.30 19.744±0.83 15.684±3.77 18.412±3.44 9.709±0.95 16.280±0.75 34.420±5.33 37.542±22.16 23.237±2.48 14.784±1.04 22.002±16.15 45.176±18.55 7.495±1.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004LE CIL_0004LE_0002 CGP 18:49979427-50196269
CIL_0004B4 CIL_0004B4_0002 CGP 18:50128201-50283019

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000038 IMP very long-chain fatty acid metabolic process
GO:0001649 IEA osteoblast differentiation
GO:0003857 IEA 3-hydroxyacyl-CoA dehydrogenase activity
GO:0005102 IEA receptor binding
GO:0005739 IDA mitochondrion
GO:0005777 IDA peroxisome
GO:0005778 IEA peroxisomal membrane
GO:0006635 IEA fatty acid beta-oxidation
GO:0008209 IEA androgen metabolic process
GO:0008210 IEA estrogen metabolic process
GO:0016020 IEA membrane
GO:0016508 IEA long-chain-enoyl-CoA hydratase activity
GO:0016853 IEA isomerase activity
GO:0033989 IEA 3alpha,7alpha,12alpha-trihydroxy-5beta-cholest-24-enoyl-CoA hydratase activity
GO:0036111 IEA very long-chain fatty-acyl-CoA metabolic process
GO:0036112 IEA medium-chain fatty-acyl-CoA metabolic process
GO:0042803 IEA protein homodimerization activity
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0044594 IEA 17-beta-hydroxysteroid dehydrogenase (NAD+) activity
GO:0060009 IMP Sertoli cell development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000256216 HSD17B4-001 protein_coding Homo_sapiens 0 2342
ENST00000414835 HSD17B4-004 protein_coding Homo_sapiens 0 2226
ENST00000442060 HSD17B4-009 nonsense_mediated_decay Homo_sapiens 0 1458
ENST00000503168 HSD17B4-013 retained_intron Homo_sapiens 0 623
ENST00000503310 HSD17B4-024 retained_intron Homo_sapiens 0 322
ENST00000504811 HSD17B4-003 protein_coding Homo_sapiens 0 2178
ENST00000507353 HSD17B4-023 retained_intron Homo_sapiens 0 351
ENST00000509514 HSD17B4-006 protein_coding Homo_sapiens 0 1373
ENST00000509606 HSD17B4-020 retained_intron Homo_sapiens 0 593
ENST00000509951 HSD17B4-011 processed_transcript Homo_sapiens 0 357
ENST00000510025 HSD17B4-005 protein_coding Homo_sapiens 0 2178
ENST00000511186 HSD17B4-015 retained_intron Homo_sapiens 0 196
ENST00000512644 HSD17B4-021 retained_intron Homo_sapiens 0 355
ENST00000512841 HSD17B4-025 processed_transcript Homo_sapiens 0 555
ENST00000513628 HSD17B4-007 protein_coding Homo_sapiens 0 1873
ENST00000515235 HSD17B4-008 retained_intron Homo_sapiens 0 1240
ENST00000515320 HSD17B4-002 protein_coding Homo_sapiens 0 2180
ENST00000522415 HSD17B4-029 processed_transcript Homo_sapiens 0 937
ENST00000523778 RP11-468O2.1-001 processed_pseudogene Homo_sapiens 0 1264

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