C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004B4_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000133835-ENSG00000133835 CGP 9606 5:119452443-119637199
GeneTranscriptPositionBiotype
ENSG00000133835 (HSD17B4)
hydroxysteroid (17-beta) dehydrogenase 4 		ENST00000256216 (HSD17B4-001) 119452443-119542333 protein_coding
ENST00000414835 (HSD17B4-004) 119452753-119542332 protein_coding
ENST00000442060 (HSD17B4-009) 119452497-119542332 nonsense_mediated_decay
ENST00000503168 (HSD17B4-013) 119452775-119478999 retained_intron
ENST00000503310 (HSD17B4-024) 119535770-119542252 retained_intron
ENST00000504811 (HSD17B4-003) 119452570-119542264 protein_coding
ENST00000505181 (HSD17B4-018) 119476448-119489283 processed_transcript
ENST00000507353 (HSD17B4-023) 119525736-119530100 retained_intron
ENST00000507695 (HSD17B4-016) 119456313-119475873 retained_intron
ENST00000508750 (HSD17B4-012) 119452766-119456732 retained_intron
ENST00000508788 (HSD17B4-019) 119476571-119478943 processed_transcript
ENST00000509514 (HSD17B4-006) 119476629-119542252 protein_coding
ENST00000509606 (HSD17B4-020) 119527158-119542332 retained_intron
ENST00000509951 (HSD17B4-011) 119525258-119542331 processed_transcript
ENST00000510025 (HSD17B4-005) 119452538-119542269 protein_coding
ENST00000511186 (HSD17B4-015) 119452473-119477489 retained_intron
ENST00000512029 (HSD17B4-022) 119496556-119499638 retained_intron
ENST00000512644 (HSD17B4-021) 119478832-119492124 retained_intron
ENST00000512841 (HSD17B4-025) 119452716-119478935 processed_transcript
ENST00000513628 (HSD17B4-007) 119476542-119542174 protein_coding
ENST00000515235 (HSD17B4-008) 119452516-119637199 retained_intron
ENST00000515320 (HSD17B4-002) 119452497-119542252 protein_coding
ENST00000518349 (HSD17B4-028) 119496541-119526024 processed_transcript
ENST00000519184 (HSD17B4-026) 119452565-119473980 processed_transcript
ENST00000520216 (HSD17B4-027) 119493818-119502080 processed_transcript
ENST00000520244 (HSD17B4-030) 119502049-119526009 processed_transcript
ENST00000522415 (HSD17B4-029) 119509141-119542016 processed_transcript
ENSG00000213663 (CTD-2158P22.1)
 ENST00000487382 (CTD-2158P22.1-001) 119547131-119547606 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0004B4_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024507-ENSMUSG00000035420 CGP 10090 18:50128201-50283019
GeneTranscriptPositionBiotype
ENSMUSG00000024507 (Hsd17b4)
hydroxysteroid (17-beta) dehydrogenase 4 		ENSMUST00000025385 (Hsd17b4-001) 50128201-50196269 protein_coding
ENSMUST00000127325 (Hsd17b4-003) 50191324-50195972 retained_intron
ENSMUST00000139502 (Hsd17b4-004) 50142369-50146569 retained_intron
ENSMUST00000152388 (Hsd17b4-002) 50128494-50142612 processed_transcript
ENSMUSG00000035420 (Fam170a)
family with sequence similarity 170, member A 		ENSMUST00000039121 (Fam170a-201) 50278369-50283019 protein_coding
ENSMUSG00000085939 (Cd63-ps)
CD63 antigen, pseudogene 		ENSMUST00000145417 (Cd63-ps-002) 50134726-50135600 processed_transcript
ENSMUST00000154992 (Cd63-ps-001) 50134795-50135511 transcribed_processed_pseudogene
ENSMUSG00000098058 (Gm8529)
predicted gene 8529 		ENSMUST00000183298 (Gm8529-001) 50220071-50220815 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004B4_0001ENSG00000133835ENST00000256216ENST00000414835ENST00000442060ENST00000503168ENST00000503310ENST00000504811ENST00000505181ENST00000507353ENST00000507695ENST00000508750ENST00000508788ENST00000509514ENST00000509606ENST00000509951ENST00000510025ENST00000511186ENST00000512029ENST00000512644ENST00000512841ENST00000513628ENST00000515235ENST00000515320ENST00000518349ENST00000519184ENST00000520216ENST00000520244ENST00000522415ENSG00000213663ENST00000487382CIL_0004B4_0002ENSMUSG00000024507ENSMUST00000025385ENSMUST00000127325ENSMUST00000139502ENSMUST00000152388ENSMUSG00000035420ENSMUST00000039121ENSMUSG00000085939ENSMUST00000145417ENSMUST00000154992ENSMUSG00000098058ENSMUST00000183298
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004B4_0001ENSG00000133835ENST00000256216ENST00000414835ENST00000503168ENST00000509606ENST00000510025ENST00000512644ENST00000513628ENST00000515235ENST00000515320ENST00000522415ENSG00000213663ENST00000487382CIL_0004B4_0002ENSMUSG00000024507ENSMUST00000025385ENSMUST00000152388ENSMUSG00000035420ENSMUST00000039121ENSMUSG00000085939ENSMUST00000145417ENSMUST00000154992ENSMUSG00000098058ENSMUST00000183298
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000133835 ENST00000256216 N/A 9.091±0.00 9.739±0.00 9.178±1.02 11.017±5.05 9.879±0.57 13.959±1.55 30.631±19.57 8.819±0.00 13.620±4.84 5.647±0.00 16.933±2.74 23.703±2.78 7.346±0.00
ENST00000414835 14.398±0.00 N/A N/A N/A 6.890±0.00 N/A 6.641±0.00 N/A N/A N/A N/A 5.897±0.00 N/A 11.798±0.00
ENST00000442060 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503168 N/A N/A N/A 40.044±0.00 N/A N/A N/A N/A N/A N/A N/A 4.924±0.00 16.313±0.00 N/A
ENST00000503310 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504811 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505181 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507353 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507695 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508750 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508788 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509514 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509606 N/A N/A N/A 18.382±0.00 N/A N/A N/A 26.846±0.00 67.561±0.00 N/A N/A 23.934±0.00 N/A N/A
ENST00000509951 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510025 N/A N/A N/A N/A N/A N/A N/A N/A 4.156±0.00 N/A N/A N/A N/A 6.228±0.00
ENST00000511186 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512029 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512644 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 30.275±0.00 N/A N/A N/A
ENST00000512841 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513628 N/A N/A N/A 8.400±0.00 N/A N/A N/A N/A N/A N/A N/A 1.598±0.00 N/A N/A
ENST00000515235 N/A N/A N/A 2.439±0.00 N/A 2.119±0.00 N/A 6.567±0.00 2.863±0.00 N/A N/A N/A N/A N/A
ENST00000515320 28.060±0.00 10.615±0.00 N/A 16.852±0.00 19.392±0.00 11.476±0.00 20.843±0.00 28.308±0.00 54.639±0.00 13.794±0.00 6.064±0.65 3.003±0.00 N/A 14.784±8.23
ENST00000518349 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519184 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520216 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520244 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522415 N/A N/A N/A 27.328±0.00 21.208±0.00 17.990±1.98 N/A 32.542±0.00 57.173±0.00 20.407±0.00 N/A 10.276±6.89 18.534±6.42 N/A
ENSG00000213663 ENST00000487382 N/A N/A N/A N/A N/A N/A N/A 0.056±0.00 N/A N/A N/A N/A 0.048±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024507 ENSMUST00000025385 33.288±9.75 21.348±2.30 19.744±0.83 15.684±3.77 18.412±3.44 9.709±0.95 16.280±0.75 34.420±5.33 37.542±22.16 23.237±2.48 14.784±1.04 22.002±16.15 45.176±18.55 7.495±1.52
ENSMUST00000127325 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139502 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152388 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 40.270±0.00
ENSMUSG00000035420 ENSMUST00000039121 N/A N/A N/A N/A N/A N/A 0.025±0.00 0.055±0.00 N/A N/A N/A 0.022±0.00 N/A 24.280±5.48
ENSMUSG00000085939 ENSMUST00000145417 4.106±1.42 N/A 0.220±0.00 0.158±0.05 1.600±0.61 1.552±1.16 0.480±0.17 5.381±2.08 0.125±0.04 1.011±0.15 N/A 3.372±2.83 0.201±0.05 0.167±0.08
ENSMUST00000154992 N/A 0.216±0.09 0.711±0.44 0.091±0.02 0.616±0.00 0.322±0.23 0.789±0.00 1.155±0.00 0.239±0.10 N/A 0.253±0.14 0.365±0.05 0.277±0.19 0.185±0.00
ENSMUSG00000098058 ENSMUST00000183298 N/A N/A N/A 0.039±0.01 N/A N/A N/A 0.071±0.03 0.033±0.02 N/A N/A 0.164±0.01 0.046±0.04 0.085±0.03

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