C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027384 Atic-001 ENSMUSG00000026192 10090 + 1:71557150-71579631 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027384
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027384 15.931±3.25 5.752±0.91 17.709±2.02 10.660±2.03 8.802±1.33 9.311±0.94 6.421±0.31 7.842±1.34 15.156±10.87 6.778±1.02 7.478±1.46 14.207±4.11 21.897±12.47 3.018±0.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005MH CIL_0005MH_0002 CGP 1:71242276-71579631
CIL_0005MI CIL_0005MI_0002 CGP 1:71557150-71653200

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003360 IEA brainstem development
GO:0003937 IEA IMP cyclohydrolase activity
GO:0004643 IEA phosphoribosylaminoimidazolecarboxamide formyltransferase activity
GO:0005739 IDA mitochondrion
GO:0006189 IEA 'de novo' IMP biosynthetic process
GO:0009116 IEA nucleoside metabolic process
GO:0009259 IEA ribonucleotide metabolic process
GO:0010035 IEA response to inorganic substance
GO:0016020 IEA membrane
GO:0021549 IEA cerebellum development
GO:0021987 IEA cerebral cortex development
GO:0031100 IEA organ regeneration
GO:0042803 ISS protein homodimerization activity
GO:0046452 IEA dihydrofolate metabolic process
GO:0046654 IEA tetrahydrofolate biosynthetic process
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000236959 ATIC-001 protein_coding Homo_sapiens 0 1888
ENST00000413174 ATIC-009 protein_coding Homo_sapiens 0 560
ENST00000426233 ATIC-013 protein_coding Homo_sapiens 0 726
ENST00000427397 ATIC-008 nonsense_mediated_decay Homo_sapiens 0 499
ENST00000435675 ATIC-007 protein_coding Homo_sapiens 0 1873
ENST00000443953 ATIC-002 nonsense_mediated_decay Homo_sapiens 0 1873
ENST00000444305 ATIC-004 nonsense_mediated_decay Homo_sapiens 4.06377e-44 182
ENST00000446622 ATIC-012 protein_coding Homo_sapiens 0 747
ENST00000467388 ATIC-014 retained_intron Homo_sapiens 0 505
ENST00000479093 ATIC-016 retained_intron Homo_sapiens 0 736
ENST00000488712 ATIC-006 retained_intron Homo_sapiens 0 241

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