C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 4 (anion exchanger), member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027415 Slc4a3-010 ENSMUSG00000006576 10090 + 1:75546496-75558890 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartLiverMuscleOvaryPlacentaENSMUST00000027415
Transcript ID Brain Breast Colon Heart Liver Muscle Ovary Placenta
ENSMUST00000027415 30.727±0.00 0.565±0.00 1.753±0.03 33.493±0.00 0.124±0.10 1.185±0.34 6.427±2.18 1.228±0.77

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0002 VISTA 1:75047166-75647630
CIL_00082R CIL_00082R_0002 VISTA 1:75469003-76073592
CIL_0006O3 CIL_0006O3_0002 CGP 1:75521529-75562172
CIL_0008ED CIL_0008ED_0002 VISTA 1:75532718-76135169
CIL_0006O4 CIL_0006O4_0002 CGP 1:75546266-77515088

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005452 IEA inorganic anion exchanger activity
GO:0005886 IDA plasma membrane
GO:0006820 IEA anion transport
GO:0015301 IDA anion:anion antiporter activity
GO:0016021 IEA integral component of membrane
GO:0051453 IDA regulation of intracellular pH

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000273063 SLC4A3-001 protein_coding Homo_sapiens 0 3480
ENST00000317151 SLC4A3-002 protein_coding Homo_sapiens 0 4242
ENST00000358055 SLC4A3-009 protein_coding Homo_sapiens 0 4318
ENST00000373760 SLC4A3-010 protein_coding Homo_sapiens 0 4244
ENST00000413743 SLC4A3-008 protein_coding Homo_sapiens 0 540
ENST00000416910 SLC4A3-011 nonsense_mediated_decay Homo_sapiens 0 2063
ENST00000425141 SLC4A3-004 nonsense_mediated_decay Homo_sapiens 0 4481
ENST00000444906 SLC4A3-005 nonsense_mediated_decay Homo_sapiens 3e-31 139
ENST00000497589 SLC4A3-003 processed_transcript Homo_sapiens 0 383

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