C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 4 (anion exchanger), member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000425141 SLC4A3-004 ENSG00000114923 9606 + 2:219627627-219641728 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonLiverOvaryPlacentaENST00000425141
Transcript ID Colon Liver Ovary Placenta
ENST00000425141 0.137±0.00 0.022±0.00 0.923±0.10 0.514±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0001 VISTA 2:219106772-219707284
CIL_00082R CIL_00082R_0001 VISTA 2:219549147-220152579
CIL_0006O3 CIL_0006O3_0001 CGP 2:219597860-219641980
CIL_0008ED CIL_0008ED_0001 VISTA 2:219606364-220208558
CIL_0006O4 CIL_0006O4_0001 CGP 2:219627327-221574202

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005452 IEA inorganic anion exchanger activity
GO:0006810 IEA transport
GO:0006820 IEA anion transport
GO:0008509 IEA anion transmembrane transporter activity
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027415 Slc4a3-010 nonsense_mediated_decay Mus_musculus 0 4481
ENSMUST00000124341 Slc4a3-001 protein_coding Mus_musculus 0 4244
ENSMUST00000132612 Slc4a3-002 retained_intron Mus_musculus 0 2933
ENSMUST00000145258 Slc4a3-012 nonsense_mediated_decay Mus_musculus 0 2063
ENSMUST00000150142 Slc4a3-004 protein_coding Mus_musculus 0 558
ENSMUST00000154101 Slc4a3-007 protein_coding Mus_musculus 0 540
ENSMUST00000138814 Slc4a3-005 protein_coding Mus_musculus 0 453
ENSMUST00000142257 Slc4a3-008 retained_intron Mus_musculus 0 407
ENSMUST00000189794 Slc4a3-013 retained_intron Mus_musculus 0 342
ENSMUST00000145516 Slc4a3-003 retained_intron Mus_musculus 0 340
ENSMUST00000129703 Slc4a3-006 retained_intron Mus_musculus 0 340
ENSMUST00000132110 Slc4a3-011 nonsense_mediated_decay Mus_musculus 1e-31 143

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