C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006O4_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000114923-ENSG00000116106 CGP 9606 2:219627327-221574202
GeneTranscriptPositionBiotype
ENSG00000114923 (SLC4A3)
solute carrier family 4 (anion exchanger), member 3 		ENST00000273063 (SLC4A3-001) 219627565-219641980 protein_coding
ENST00000317151 (SLC4A3-002) 219627661-219641980 protein_coding
ENST00000358055 (SLC4A3-009) 219627327-219641971 protein_coding
ENST00000373760 (SLC4A3-010) 219627394-219641971 protein_coding
ENST00000413743 (SLC4A3-008) 219631130-219633009 protein_coding
ENST00000416910 (SLC4A3-011) 219632059-219637795 nonsense_mediated_decay
ENST00000425141 (SLC4A3-004) 219627627-219641728 nonsense_mediated_decay
ENST00000444906 (SLC4A3-005) 219633346-219635781 nonsense_mediated_decay
ENST00000497589 (SLC4A3-003) 219628516-219632418 processed_transcript
ENSG00000116106 (EPHA4)
EPH receptor A4 		ENST00000281821 (EPHA4-201) 221418029-221572290 protein_coding
ENST00000409854 (EPHA4-003) 221425599-221572283 protein_coding
ENST00000409938 (EPHA4-001) 221425901-221574202 protein_coding
ENST00000415749 (EPHA4-013) 221563993-221572300 nonsense_mediated_decay
ENST00000419964 (EPHA4-005) 221563997-221569481 protein_coding
ENST00000424339 (EPHA4-009) 221425915-221434249 nonsense_mediated_decay
ENST00000434266 (EPHA4-004) 221564279-221574158 protein_coding
ENST00000441679 (EPHA4-006) 221457954-221502560 protein_coding
ENST00000443796 (EPHA4-012) 221457889-221572300 protein_coding
ENST00000463446 (EPHA4-007) 221482440-221501344 retained_intron
ENST00000469354 (EPHA4-014) 221418027-221425575 processed_transcript
ENST00000472696 (EPHA4-015) 221420445-221425540 processed_transcript
ENST00000495693 (EPHA4-008) 221436457-221437496 retained_intron
ENST00000541600 (EPHA4-002) 221564106-221572358 protein_coding
ENSG00000224819 (AC093843.1)
 ENST00000424395 (AC093843.1-001) 220791078-220797893 lincRNA
ENSG00000225911 (AC009310.1)
 ENST00000414414 (AC009310.1-001) 220048822-220049272 processed_pseudogene
ENSG00000226726 (TMEM256P2)
transmembrane protein 256 pseudogene 2 		ENST00000440241 (TMEM256P2-001) 221532668-221533008 processed_pseudogene
ENSG00000227308 (AC009502.4)
 ENST00000416861 (AC009502.4-001) 219686987-219714686 lincRNA
ENST00000442416 (AC009502.4-003) 219730110-219737742 lincRNA
ENST00000606673 (AC009502.4-002) 219685492-219737937 lincRNA
ENST00000607654 (AC009502.4-004) 219685381-219687345 lincRNA
ENSG00000228909 (AC008281.1)
 ENST00000438659 (AC008281.1-001) 219904051-219904889 lincRNA
ENSG00000231802 (AC009502.1)
 ENST00000452903 (AC009502.1-001) 219684030-219684795 processed_pseudogene
ENSG00000236451 (AC067956.1)
 ENST00000414512 (AC067956.1-001) 220450679-220704566 lincRNA
ENSG00000239498 (AC114765.1)
 ENST00000432993 (AC114765.1-001) 220105656-220450778 lincRNA
ENSG00000267919 (RP11-256I23.3)
 ENST00000597288 (RP11-256I23.3-001) 219645090-219645631 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0006O4_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000006576-ENSMUSG00000026235 CGP 10090 1:75546266-77515088
GeneTranscriptPositionBiotype
ENSMUSG00000006576 (Slc4a3)
solute carrier family 4 (anion exchanger), member 3 		ENSMUST00000027415 (Slc4a3-010) 75546496-75558890 nonsense_mediated_decay
ENSMUST00000124341 (Slc4a3-001) 75546266-75562172 protein_coding
ENSMUST00000129703 (Slc4a3-006) 75546296-75547507 retained_intron
ENSMUST00000132110 (Slc4a3-011) 75551709-75553732 nonsense_mediated_decay
ENSMUST00000132612 (Slc4a3-002) 75546644-75560881 retained_intron
ENSMUST00000138814 (Slc4a3-005) 75546533-75548011 protein_coding
ENSMUST00000142257 (Slc4a3-008) 75549768-75551129 retained_intron
ENSMUST00000145258 (Slc4a3-012) 75550595-75555125 nonsense_mediated_decay
ENSMUST00000145516 (Slc4a3-003) 75546527-75547744 retained_intron
ENSMUST00000150142 (Slc4a3-004) 75546462-75548038 protein_coding
ENSMUST00000154101 (Slc4a3-007) 75549599-75551382 protein_coding
ENSMUST00000189794 (Slc4a3-013) 75546656-75547534 retained_intron
ENSMUSG00000026235 (Epha4)
Eph receptor A4 		ENSMUST00000027451 (Epha4-201) 77367185-77515088 protein_coding
ENSMUST00000186930 (Epha4-005) 77401223-77515083 protein_coding
ENSMUST00000187346 (Epha4-006) 77373613-77377607 protein_coding
ENSMUST00000188797 (Epha4-001) 77373139-77515088 protein_coding
ENSMUST00000188952 (Epha4-002) 77367189-77515079 nonsense_mediated_decay
ENSMUST00000189934 (Epha4-004) 77396797-77515085 retained_intron
ENSMUST00000190149 (Epha4-003) 77373631-77515079 nonsense_mediated_decay
ENSMUSG00000082012 (Gm5257)
predicted gene 5257 		ENSMUST00000121823 (Gm5257-001) 75636390-75637179 processed_pseudogene
ENSMUSG00000083244 (Gm15180)
predicted gene 15180 		ENSMUST00000117745 (Gm15180-001) 75568083-75568574 processed_pseudogene
ENSMUSG00000099996 (RP24-103F2.1)
predicted gene 29065 		ENSMUST00000188786 (RP24-103F2.1-001) 76016658-76018756 lincRNA
ENSMUSG00000100534 (RP24-199M24.1)
predicted gene 816 		ENSMUST00000191156 (RP24-199M24.1-001) 76890472-77027792 lincRNA
ENSMUSG00000100553 (RP24-537H9.1)
predicted gene, 17751 		ENSMUST00000189132 (RP24-537H9.1-002) 76489133-76502028 lincRNA
ENSMUST00000190362 (RP24-537H9.1-001) 76489133-76501444 lincRNA
ENSMUSG00000100827 (RP24-537H9.2)
predicted gene 29069 		ENSMUST00000185857 (RP24-537H9.2-001) 76420692-76528422 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006O4_0001ENSG00000114923ENST00000273063ENST00000317151ENST00000358055ENST00000373760ENST00000413743ENST00000416910ENST00000425141ENST00000444906ENST00000497589ENSG00000116106ENST00000281821ENST00000409854ENST00000409938ENST00000415749ENST00000419964ENST00000424339ENST00000434266ENST00000441679ENST00000443796ENST00000463446ENST00000469354ENST00000472696ENST00000495693ENST00000541600ENSG00000224819ENST00000424395ENSG00000225911ENST00000414414ENSG00000226726ENST00000440241ENSG00000227308ENST00000416861ENST00000442416ENST00000606673ENST00000607654ENSG00000228909ENST00000438659ENSG00000231802ENST00000452903ENSG00000236451ENST00000414512ENSG00000239498ENST00000432993ENSG00000267919ENST00000597288CIL_0006O4_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000114923 ENST00000273063 N/A 0.214±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000317151 0.454±0.00 1.233±0.00 0.102±0.00 2.713±1.43 0.951±0.00 0.998±0.00 11.464±9.44 N/A 0.127±0.00 0.365±0.00 0.031±0.00 14.185±9.53 0.938±0.16 N/A
ENST00000358055 N/A 0.241±0.00 N/A N/A 0.492±0.00 N/A N/A 1.264±0.00 N/A N/A N/A 10.981±0.00 N/A 1.059±0.00
ENST00000373760 N/A N/A N/A 3.175±1.00 N/A N/A 9.665±5.21 N/A N/A N/A N/A N/A 0.917±0.00 4.170±0.00
ENST00000413743 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000416910 N/A N/A 0.532±0.00 N/A N/A N/A N/A N/A N/A 0.641±0.00 N/A N/A 0.591±0.00 N/A
ENST00000425141 N/A N/A N/A N/A N/A 0.137±0.00 N/A N/A 0.022±0.00 N/A N/A 0.923±0.10 0.514±0.00 N/A
ENST00000444906 N/A N/A N/A N/A N/A 0.281±0.00 N/A N/A N/A N/A N/A 1.706±0.00 N/A N/A
ENST00000497589 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.064±0.00 N/A N/A N/A
ENSG00000116106 ENST00000281821 1.331±0.00 1.477±0.00 N/A 10.231±0.99 0.723±0.00 1.217±0.82 1.892±1.11 1.152±0.00 N/A 0.657±0.00 0.729±0.00 1.301±0.67 0.229±0.00 2.891±1.52
ENST00000409854 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.257±0.00 N/A N/A
ENST00000409938 N/A N/A N/A 6.296±0.00 N/A 1.604±0.00 0.994±0.00 0.079±0.00 1.355±0.00 1.902±0.00 0.174±0.00 0.988±0.00 0.194±0.00 3.916±0.00
ENST00000415749 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000419964 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.319±0.00 N/A N/A N/A N/A
ENST00000424339 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000434266 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000441679 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000443796 N/A N/A N/A N/A N/A N/A N/A 0.724±0.00 N/A N/A N/A N/A N/A N/A
ENST00000463446 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469354 N/A N/A N/A 4.725±0.00 0.620±0.00 1.596±0.00 N/A 0.262±0.23 N/A 1.332±0.00 N/A 1.992±0.69 0.255±0.06 4.182±0.00
ENST00000472696 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.519±0.00 N/A N/A N/A
ENST00000495693 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000541600 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000224819 ENST00000424395 N/A N/A N/A N/A N/A N/A 0.090±0.00 N/A N/A N/A N/A 0.132±0.00 N/A 0.058±0.00
ENSG00000225911 ENST00000414414 N/A N/A N/A 0.032±0.00 N/A N/A N/A N/A N/A 0.146±0.00 1.662±0.00 N/A N/A 0.151±0.00
ENSG00000226726 ENST00000440241 N/A 0.064±0.00 N/A N/A N/A N/A 0.181±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000227308 ENST00000416861 N/A N/A N/A N/A N/A 0.230±0.00 N/A N/A N/A N/A N/A N/A N/A 0.081±0.00
ENST00000442416 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.099±0.00 N/A N/A
ENST00000606673 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.286±0.00 N/A N/A N/A N/A
ENST00000607654 0.311±0.00 0.627±0.00 N/A 0.249±0.00 0.269±0.00 0.421±0.00 0.138±0.00 0.255±0.00 1.043±0.00 0.251±0.00 0.280±0.00 0.075±0.04 0.452±0.00 0.175±0.06
ENSG00000228909 ENST00000438659 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.066±0.00 0.070±0.00 0.716±0.19
ENSG00000231802 ENST00000452903 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.040±0.00 N/A 0.052±0.00 0.031±0.02
ENSG00000236451 ENST00000414512 N/A N/A N/A N/A N/A N/A 0.024±0.00 N/A N/A N/A N/A 0.058±0.03 0.018±0.00 0.048±0.04
ENSG00000239498 ENST00000432993 N/A N/A N/A 0.089±0.00 N/A N/A N/A N/A N/A N/A N/A 0.089±0.06 N/A 0.076±0.03
ENSG00000267919 ENST00000597288 N/A N/A N/A 0.100±0.00 N/A N/A 0.912±0.00 N/A N/A N/A N/A 0.208±0.02 0.221±0.12 0.935±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000006576 ENSMUST00000027415 N/A N/A N/A 30.727±0.00 0.565±0.00 1.753±0.03 33.493±0.00 N/A 0.124±0.10 N/A 1.185±0.34 6.427±2.18 1.228±0.77 N/A
ENSMUST00000124341 0.499±0.00 9.857±0.00 0.883±0.00 1.780±0.00 0.828±0.29 0.448±0.00 6.000±1.43 N/A 0.087±0.02 1.446±0.09 N/A 4.382±0.59 N/A 0.775±0.24
ENSMUST00000129703 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132110 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132612 2.008±0.96 24.793±4.57 2.396±0.44 8.135±4.90 1.021±0.19 1.579±0.44 10.588±5.84 1.119±0.39 0.162±0.08 1.732±0.24 0.426±0.09 4.894±1.58 0.722±0.60 0.824±0.19
ENSMUST00000138814 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142257 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.999±0.00
ENSMUST00000145258 N/A N/A N/A N/A N/A N/A N/A N/A 0.188±0.10 N/A 1.225±0.00 5.549±0.00 0.339±0.00 N/A
ENSMUST00000145516 N/A N/A N/A N/A N/A N/A N/A N/A 0.285±0.08 N/A N/A N/A N/A N/A
ENSMUST00000150142 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154101 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000189794 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000026235 ENSMUST00000027451 0.923±0.00 0.122±0.09 1.681±0.00 6.775±3.75 0.297±0.03 0.463±0.13 5.096±0.79 0.415±0.04 0.026±0.01 N/A 0.389±0.00 0.764±0.29 1.266±0.13 0.019±0.01
ENSMUST00000186930 N/A 0.624±0.20 N/A N/A 1.541±0.00 3.968±0.00 N/A N/A 0.104±0.00 N/A N/A 2.708±0.00 N/A N/A
ENSMUST00000187346 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.042±0.00
ENSMUST00000188797 N/A 0.158±0.00 N/A N/A 0.308±0.00 N/A N/A N/A 0.048±0.01 N/A N/A 1.443±0.61 N/A 0.123±0.00
ENSMUST00000188952 1.661±0.46 0.081±0.03 2.195±0.95 14.360±1.71 0.420±0.12 0.784±0.14 5.041±2.68 0.748±0.19 0.119±0.09 3.137±0.90 0.317±0.10 1.027±0.57 0.887±0.50 0.067±0.08
ENSMUST00000189934 N/A 0.093±0.00 N/A N/A 0.170±0.00 0.303±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190149 1.015±0.24 0.239±0.08 N/A 25.029±0.00 0.442±0.13 0.847±0.22 2.957±0.56 0.647±0.17 0.039±0.01 1.964±0.19 N/A 1.383±0.48 1.607±0.97 0.120±0.02
ENSMUSG00000082012 ENSMUST00000121823 0.168±0.06 N/A 0.015±0.01 0.006±0.01 0.056±0.00 N/A N/A 0.048±0.00 0.007±0.00 0.148±0.00 N/A 0.330±0.12 0.509±0.37 N/A
ENSMUSG00000083244 ENSMUST00000117745 N/A N/A N/A N/A 0.313±0.00 N/A 0.087±0.00 N/A N/A N/A N/A 0.085±0.00 N/A N/A
ENSMUSG00000099996 ENSMUST00000188786 N/A N/A N/A N/A N/A N/A N/A N/A 0.195±0.14 N/A N/A N/A 0.015±0.00 N/A
ENSMUSG00000100534 ENSMUST00000191156 N/A N/A N/A 0.013±0.01 N/A N/A 0.014±0.00 N/A N/A N/A N/A N/A 0.002±0.00 N/A
ENSMUSG00000100553 ENSMUST00000189132 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.437±0.27 N/A N/A
ENSMUST00000190362 N/A N/A N/A 0.065±0.03 N/A N/A N/A N/A 0.037±0.01 N/A N/A 0.333±0.15 N/A 0.039±0.02
ENSMUSG00000100827 ENSMUST00000185857 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.038±0.00 N/A N/A N/A

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