C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | UBE2F-SCLY readthrough (NMD candidate) | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000449891  |
UBE2F-SCLY-001 |
ENSG00000258984 |
9606 | + |
2:237967014-238099412  |
nonsense_mediated_decay |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0008D3 | CIL_0008D3_0001 | VISTA | 2:237594726-238198955 |
| CIL_0003NH | CIL_0003NH_0001 | CGP | 2:237858893-238042782 |
| CIL_0003NI | CIL_0003NI_0001 | CGP | 2:237967014-238099413 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| No GO terms available. | ||
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000027532
|
Scly-001 | protein_coding | Mus_musculus | 0 | 1057 |
|
ENSMUST00000153621
|
Scly-002 | retained_intron | Mus_musculus | 0 | 675 |
|
ENSMUST00000154045
|
Scly-006 | nonsense_mediated_decay | Mus_musculus | 0 | 595 |
|
ENSMUST00000147523
|
Scly-008 | protein_coding | Mus_musculus | 0 | 580 |
|
ENSMUST00000142488
|
Scly-005 | protein_coding | Mus_musculus | 0 | 512 |
|
ENSMUST00000137074
|
Scly-010 | protein_coding | Mus_musculus | 0 | 449 |
|
ENSMUST00000124832
|
Scly-007 | protein_coding | Mus_musculus | 0 | 411 |
|
ENSMUST00000178627
|
Ube2f-201 | protein_coding | Mus_musculus | 0 | 368 |
|
ENSMUST00000171165
|
Ube2f-002 | protein_coding | Mus_musculus | 0 | 337 |
|
ENSMUST00000142802
|
Scly-003 | processed_transcript | Mus_musculus | 0 | 309 |
|
ENSMUST00000171112
|
Ube2f-004 | protein_coding | Mus_musculus | 0 | 281 |
|
ENSMUST00000191368
|
Ube2f-003 | protein_coding | Mus_musculus | 0 | 281 |
|
ENSMUST00000059743
|
Ube2f-001 | protein_coding | Mus_musculus | 0 | 281 |
|
ENSMUST00000188576
|
Ube2f-007 | retained_intron | Mus_musculus | 0 | 281 |
|
ENSMUST00000185950
|
Ube2f-009 | retained_intron | Mus_musculus | 0 | 252 |
|
ENSMUST00000080066
|
Gm7099-201 | pseudogene | Mus_musculus | 0 | 241 |
|
ENSMUST00000071825
|
Gm5434-201 | protein_coding | Mus_musculus | 0 | 235 |
|
ENSMUST00000191533
|
Ube2f-006 | protein_coding | Mus_musculus | 0 | 219 |
|
ENSMUST00000181346
|
Gm26864-001 | processed_pseudogene | Mus_musculus | 3e-27 | 128 |
|
ENSMUST00000185697
|
Ube2f-005 | retained_intron | Mus_musculus | 5e-25 | 121 |
|
ENSMUST00000189589
|
Ube2f-010 | retained_intron | Mus_musculus | 3e-17 | 95 |
