C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cyclin T2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027587 Ccnt2-001 ENSMUSG00000026349 10090 + 1:127774164-127808061 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027587
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027587 1.761±0.59 7.269±1.33 10.655±5.84 4.357±1.08 2.369±0.99 1.870±0.91 2.294±0.64 2.960±1.98 3.416±0.41 1.762±0.23 2.417±0.77 2.389±0.00 0.424±0.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007T0 CIL_0007T0_0002 VISTA 1:127230775-127832241
CIL_0001IZ CIL_0001IZ_0002 CGP 1:127729413-127808061
CIL_0006VR CIL_0006VR_0002 CGP 1:127774164-127840321

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000079 IEA regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0005634 ISO nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0019901 IEA protein kinase binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000053282 ccnt2a-001 protein_coding Danio_rerio 0 612
ENST00000264157 CCNT2-001 protein_coding Homo_sapiens 0 3389
ENST00000295238 CCNT2-002 protein_coding Homo_sapiens 0 2134
ENST00000417175 CCNT2-009 nonsense_mediated_decay Homo_sapiens 0 776
ENST00000419781 CCNT2-004 nonsense_mediated_decay Homo_sapiens 0 2507
ENST00000438691 CCNT2-005 protein_coding Homo_sapiens 5.04467e-44 182
ENST00000446247 CCNT2-007 protein_coding Homo_sapiens 0 534
ENST00000452521 CCNT2-010 protein_coding Homo_sapiens 0 398
ENST00000452839 CCNT2-006 nonsense_mediated_decay Homo_sapiens 0 1334
ENST00000464932 CCNT2-003 retained_intron Homo_sapiens 0 407
ENST00000475094 CCNT2-008 retained_intron Homo_sapiens 0 795

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