C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cyclin T2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000295238 CCNT2-002 ENSG00000082258 9606 + 2:134918825-134957017 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000295238
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000295238 1.865±0.00 4.862±0.00 1.301±0.00 2.485±0.56 2.333±0.00 1.943±0.17 1.424±0.28 3.685±0.00 2.269±0.46 2.366±0.40 0.823±0.33 4.352±2.37 1.437±0.55 5.720±1.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001IZ CIL_0001IZ_0001 CGP 2:134838547-134959342
CIL_0006VR CIL_0006VR_0001 CGP 2:134918235-135047468

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000079 IEA regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006351 TAS transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0007049 IEA cell cycle
GO:0007179 TAS transforming growth factor beta receptor signaling pathway
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0019901 IEA protein kinase binding
GO:0045944 TAS positive regulation of transcription from RNA polymerase II promoter
GO:0051301 IEA cell division

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000112570 Ccnt2-002 protein_coding Mus_musculus 0 3234
ENSMUST00000027587 Ccnt2-001 protein_coding Mus_musculus 0 2134
ENSMUST00000153359 Ccnt2-005 processed_transcript Mus_musculus 0 1251
ENSMUST00000143513 Ccnt2-007 retained_intron Mus_musculus 0 885
ENSMUST00000149760 Ccnt2-003 retained_intron Mus_musculus 0 800
ENSMUST00000125760 Ccnt2-006 retained_intron Mus_musculus 0 693
ENSMUST00000126850 Ccnt2-004 retained_intron Mus_musculus 0 606
ENSDART00000053282 ccnt2a-001 protein_coding Danio_rerio 0 606
ENSDART00000053045 ccnt2b-001 protein_coding Danio_rerio 0 460

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