C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polypeptide N-acetylgalactosaminyltransferase 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409882 GALNT3-010 ENSG00000115339 9606 - 2:165747803-165761907 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000409882
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000409882 0.107±0.00 0.340±0.00 0.697±0.00 1.878±0.65 4.168±1.03 2.384±0.00 0.142±0.08 2.212±0.00 5.608±5.19 1.726±0.81 5.572±3.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087V CIL_00087V_0001 VISTA 2:165345029-165948304
CIL_0003S2 CIL_0003S2_0002 CGP 2:165469647-165794682
CIL_0006CI CIL_0006CI_0001 CGP 2:165747591-165953843

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028378 Galnt3-001 protein_coding Mus_musculus 0 1930
ENSMUST00000155453 Galnt3-004 processed_transcript Mus_musculus 0 843
ENSMUST00000150793 Galnt3-003 processed_transcript Mus_musculus 0 483
ENSMUST00000153563 Galnt3-002 processed_transcript Mus_musculus 0 324
ENSMUST00000190477 RP23-359O14.2-001 processed_pseudogene Mus_musculus 2e-22 111

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