C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAE1 RNA export 1 homolog (S. pombe)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029013 Rae1-001 ENSMUSG00000027509 10090 + 2:173000117-173015739 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029013
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029013 25.543±5.34 125.977±5.17 20.004±4.38 19.741±11.74 28.135±11.60 21.560±7.93 9.586±1.84 21.832±2.11 20.776±9.36 18.593±2.44 4.895±0.85 39.626±22.25 27.441±15.77 28.163±12.58

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YW CIL_0008YW_0002 VISTA 2:172561962-173164167
CIL_0008TD CIL_0008TD_0002 VISTA 2:172564603-173165839
CIL_0008HJ CIL_0008HJ_0002 VISTA 2:172734798-173336840
CIL_0008BA CIL_0008BA_0002 VISTA 2:172748983-173356071
CIL_0002XR CIL_0002XR_0002 CGP 2:172977700-173015739

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0071407 IDA cellular response to organic cyclic compound

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000371242 RAE1-002 protein_coding Homo_sapiens 0 1362
ENST00000395840 RAE1-003 protein_coding Homo_sapiens 0 1362
ENST00000395841 RAE1-001 protein_coding Homo_sapiens 0 1362
ENST00000462438 RAE1-004 retained_intron Homo_sapiens 1e-31 143
ENST00000492498 RAE1-008 nonsense_mediated_decay Homo_sapiens 0 752
ENST00000527947 RAE1-010 protein_coding Homo_sapiens 0 1234

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