C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: intraflagellar transport 80
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029347 Ift80-201 ENSMUSG00000027778 10090 - 3:68892525-68994537 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonLiverMuscleOvaryPlacentaENSMUST00000029347
Transcript ID Adrenal Brain Breast Colon Liver Muscle Ovary Placenta
ENSMUST00000029347 0.640±0.00 1.003±0.09 0.822±0.00 0.163±0.00 0.647±0.27 0.713±0.28 2.512±0.79 0.667±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004JR CIL_0004JR_0003 CGP 3:68892499-69034623

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001649 IGI osteoblast differentiation
GO:0002062 IGI chondrocyte differentiation
GO:0003674 ND molecular_function
GO:0005737 IEA cytoplasm
GO:0005813 IDA centrosome
GO:0005929 IDA cilium
GO:0007224 IMP smoothened signaling pathway
GO:0030992 IDA intraciliary transport particle B
GO:0036064 ISO ciliary basal body
GO:0042073 IC intraciliary transport
GO:0042384 IMP cilium assembly
GO:0045880 IMP positive regulation of smoothened signaling pathway
GO:0050680 IMP negative regulation of epithelial cell proliferation
GO:0060271 IMP cilium morphogenesis
GO:0060349 IMP bone morphogenesis
GO:2000051 IGI negative regulation of non-canonical Wnt signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000326448 IFT80-001 protein_coding Homo_sapiens 0 2787
ENST00000463240 IFT80-027 processed_transcript Homo_sapiens 0 285
ENST00000465537 IFT80-022 protein_coding Homo_sapiens 0 915
ENST00000468218 IFT80-015 protein_coding Homo_sapiens 0 399
ENST00000468327 IFT80-021 processed_transcript Homo_sapiens 0 394
ENST00000472555 IFT80-024 nonsense_mediated_decay Homo_sapiens 0 436
ENST00000472773 IFT80-016 processed_transcript Homo_sapiens 0 512
ENST00000475677 IFT80-008 protein_coding Homo_sapiens 0 538
ENST00000477495 IFT80-013 processed_transcript Homo_sapiens 0 512
ENST00000478278 IFT80-028 retained_intron Homo_sapiens 0 289
ENST00000478370 IFT80-014 protein_coding Homo_sapiens 0 438
ENST00000478460 IFT80-017 processed_transcript Homo_sapiens 0 407
ENST00000482317 IFT80-019 nonsense_mediated_decay Homo_sapiens 0 231
ENST00000483325 IFT80-026 protein_coding Homo_sapiens 0 364
ENST00000483465 IFT80-004 protein_coding Homo_sapiens 0 2732
ENST00000483754 RP11-432B6.3-001 nonsense_mediated_decay Homo_sapiens 0 2278
ENST00000484963 IFT80-023 nonsense_mediated_decay Homo_sapiens 0 219
ENST00000486856 IFT80-020 protein_coding Homo_sapiens 0 315
ENST00000487943 IFT80-003 retained_intron Homo_sapiens 0 2104
ENST00000489004 IFT80-012 protein_coding Homo_sapiens 0 412
ENST00000496589 IFT80-002 protein_coding Homo_sapiens 0 2732
ENST00000498409 IFT80-009 protein_coding Homo_sapiens 0 675
ENST00000558038 RP11-390M11.1-001 processed_pseudogene Homo_sapiens 0 1062

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