C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SH3-domain GRB2-like 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030212 Sh3gl2-001 ENSMUSG00000028488 10090 + 4:85205441-85389380 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030212
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030212 1.910±1.85 5.710±2.01 61.432±4.75 17.280±4.16 0.256±0.16 6.558±1.98 0.288±0.05 5.532±0.68 0.039±0.03 1.486±0.23 0.049±0.02 3.177±1.03 0.162±0.19 5.122±2.42

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008E9 CIL_0008E9_0002 VISTA 4:84686009-85288497
CIL_0007VQ CIL_0007VQ_0002 VISTA 4:84695828-85296432
CIL_00013X CIL_00013X_0002 CGP 4:84884309-85639195
CIL_00013Y CIL_00013Y_0002 CGP 4:85205126-86428385

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002090 IDA regulation of receptor internalization
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0008289 IEA lipid binding
GO:0016020 IEA membrane
GO:0042802 IEA identical protein binding
GO:0048488 IGI synaptic vesicle endocytosis
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000324537 SH3GL3-001 protein_coding Homo_sapiens 0.000000001 69
ENST00000380607 SH3GL2-001 protein_coding Homo_sapiens 0 1709
ENST00000427482 SH3GL3-002 protein_coding Homo_sapiens 2e-37 161
ENST00000492099 SH3GL3-003 retained_intron Homo_sapiens 0.00000000002 75
ENST00000563901 SH3GL3-005 nonsense_mediated_decay Homo_sapiens 1e-28 132

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