C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SH3-domain GRB2-like 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000563901 SH3GL3-005 ENSG00000140600 9606 + 15:83447376-83618739 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyLungOvaryPlacentaTestisENST00000563901
Transcript ID Brain Kidney Lung Ovary Placenta Testis
ENST00000563901 17.450±6.74 0.447±0.00 0.532±0.39 0.099±0.06 0.918±0.74 7.578±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006KR CIL_0006KR_0001 CGP 15:83255903-83618743
CIL_0007U9 CIL_0007U9_0001 VISTA 15:83407808-84009696
CIL_000406 CIL_000406_0001 CGP 15:83447228-84039842

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0006897 IEA endocytosis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000032874 Sh3gl3-001 protein_coding Mus_musculus 0 1434
ENSMUST00000177895 Sh3gl3-006 nonsense_mediated_decay Mus_musculus 0 1426
ENSMUST00000179318 Sh3gl3-002 protein_coding Mus_musculus 0 1129
ENSMUST00000177883 Sh3gl3-005 nonsense_mediated_decay Mus_musculus 0 911
ENSMUST00000121498 Sh3d2c-ps1-001 processed_pseudogene Mus_musculus 0 791
ENSMUST00000180183 Sh3gl3-007 protein_coding Mus_musculus 0 647
ENSMUST00000178526 Sh3gl3-008 protein_coding Mus_musculus 0 470
ENSMUST00000180243 Sh3gl3-003 protein_coding Mus_musculus 0 449
ENSMUST00000179800 Sh3gl3-009 retained_intron Mus_musculus 0 272
ENSMUST00000107189 Sh3gl2-003 protein_coding Mus_musculus 1e-28 132
ENSMUST00000107188 Sh3gl2-002 protein_coding Mus_musculus 1e-28 132
ENSMUST00000030212 Sh3gl2-001 protein_coding Mus_musculus 1e-28 132
ENSMUST00000107184 Sh3gl2-004 protein_coding Mus_musculus 0.00000000002 75

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