C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syntaxin 18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031008 Stx18-005 ENSMUSG00000029125 10090 + 5:38039233-38136817 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastHeartLiverMuscleOvaryPlacentaENSMUST00000031008
Transcript ID Adipose Bladder Breast Heart Liver Muscle Ovary Placenta
ENSMUST00000031008 4.148±0.39 4.453±0.49 4.390±0.00 1.669±0.07 2.730±0.58 2.851±0.59 8.761±0.32 9.475±3.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000967 CIL_000967_0002 VISTA 5:37518652-38119645
CIL_0008Y0 CIL_0008Y0_0002 VISTA 5:37525669-38129220
CIL_0008DJ CIL_0008DJ_0002 VISTA 5:37551391-38152218
CIL_000969 CIL_000969_0002 VISTA 5:37601106-38202493
CIL_00096C CIL_00096C_0002 VISTA 5:37617742-38218594
CIL_00096B CIL_00096B_0002 VISTA 5:37667623-38269196
CIL_0008QQ CIL_0008QQ_0002 VISTA 5:37760247-38361421
CIL_00096M CIL_00096M_0002 VISTA 5:37765055-38366694
CIL_0008ZA CIL_0008ZA_0002 VISTA 5:37806142-38406996

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005484 IEA SNAP receptor activity
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0006886 IEA intracellular protein transport
GO:0016021 IEA integral component of membrane
GO:0016192 IEA vesicle-mediated transport
GO:0019904 IPI protein domain specific binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000306200 STX18-001 protein_coding Homo_sapiens 0 1116
ENST00000503861 STX18-006 nonsense_mediated_decay Homo_sapiens 0 468
ENST00000505286 STX18-002 protein_coding Homo_sapiens 0 1116
ENST00000507908 STX18-004 protein_coding Homo_sapiens 0 628
ENST00000512195 STX18-007 protein_coding Homo_sapiens 0 558
ENST00000512780 STX18-005 retained_intron Homo_sapiens 0 606
ENST00000583091 RP11-1148O4.1-001 transcribed_processed_pseudogene Homo_sapiens 0 998

Loading