C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000967_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm425 VISTA 9606 4:4564825-5165938
GeneTranscriptPositionBiotype
ENSG00000152953 (STK32B)
serine/threonine kinase 32B 		ENST00000282908 (STK32B-001) 5051442-5500998 protein_coding
ENST00000505508 (STK32B-007) 5214242-5468070 processed_transcript
ENST00000508728 (STK32B-008) 5437917-5499114 processed_transcript
ENST00000510398 (STK32B-002) 5139636-5500988 protein_coding
ENST00000511959 (STK32B-010) 5432286-5447330 retained_intron
ENST00000512018 (STK32B-004) 5051596-5499449 nonsense_mediated_decay
ENST00000512636 (STK32B-005) 5139560-5500994 protein_coding
ENST00000513705 (STK32B-006) 5204079-5345455 processed_transcript
ENSG00000163132 (MSX1)
msh homeobox 1 		ENST00000382723 (MSX1-001) 4859666-4863936 protein_coding
ENST00000468421 (MSX1-002) 4862428-4863028 processed_transcript
ENSG00000170891 (CYTL1)
cytokine-like 1 		ENST00000307746 (CYTL1-001) 5014586-5019472 protein_coding
ENST00000506508 (CYTL1-003) 5014827-5019437 protein_coding
ENST00000509419 (CYTL1-004) 5015144-5019441 protein_coding
ENSG00000200761 (RN7SKP113)
RNA, 7SK small nuclear pseudogene 113 		ENST00000363891 (RN7SKP113-201) 4920770-4921064 misc_RNA
ENSG00000247708 (STX18-AS1)
STX18 antisense RNA 1 (head to head) 		ENST00000499430 (STX18-AS1-004) 4542131-4544907 antisense
ENST00000502693 (STX18-AS1-003) 4542240-4637904 antisense
ENST00000507244 (STX18-AS1-001) 4542143-4560559 antisense
ENST00000512438 (STX18-AS1-002) 4542199-4591175 antisense
ENST00000514763 (STX18-AS1-005) 4542418-4545060 antisense
ENST00000608184 (STX18-AS1-007) 4649424-4708600 antisense
ENST00000610009 (STX18-AS1-006) 4542204-4710938 antisense
ENSG00000251587 (LDHAP1)
lactate dehydrogenase A pseudogene 1 		ENST00000509421 (LDHAP1-001) 4894182-4895173 processed_pseudogene
ENSG00000273396 (LINC01396)
long intergenic non-protein coding RNA 1396 		ENST00000609099 (LINC01396-001) 4844437-4850827 lincRNA
ENSG00000280310 (RP11-326I19.2)
 ENST00000624794 (RP11-326I19.2-001) 4820405-4821452 TEC

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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CIL_000967_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm425 VISTA 10090 5:37518652-38119645
GeneTranscriptPositionBiotype
ENSMUSG00000029123 (Stk32b)
serine/threonine kinase 32B 		ENSMUST00000094836 (Stk32b-201) 37446828-37717153 protein_coding
ENSMUSG00000029125 (Stx18)
syntaxin 18 		ENSMUST00000031008 (Stx18-005) 38039233-38136817 protein_coding
ENSMUST00000042146 (Stx18-004) 38039251-38136819 protein_coding
ENSMUST00000114126 (Stx18-001) 38038742-38137765 protein_coding
ENSMUST00000141286 (Stx18-007) 38134395-38136435 retained_intron
ENSMUST00000146864 (Stx18-002) 38076557-38128073 processed_transcript
ENSMUST00000147667 (Stx18-006) 38120909-38128099 retained_intron
ENSMUST00000154929 (Stx18-003) 38039283-38136272 protein_coding
ENSMUSG00000048450 (Msx1)
msh homeobox 1 		ENSMUST00000063116 (Msx1-001) 37820485-37824583 protein_coding
ENSMUST00000183013 (Msx1-003) 37822703-37824582 retained_intron
ENSMUSG00000062329 (Cytl1)
cytokine-like 1 		ENSMUST00000073554 (Cytl1-201) 37735519-37739820 protein_coding

Mus musculus Ensembl (GRCm38)

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Transcripts
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000967_0001ENSG00000152953ENST00000282908ENST00000505508ENST00000508728ENST00000510398ENST00000511959ENST00000512018ENSG00000163132ENST00000382723ENSG00000170891ENST00000307746ENST00000506508ENST00000509419ENSG00000200761ENST00000363891ENSG00000247708ENST00000499430ENSG00000251587ENST00000509421ENSG00000273396ENST00000609099ENSG00000280310ENST00000624794CIL_000967_0002ENSMUSG00000029123ENSMUST00000094836ENSMUSG00000029125ENSMUST00000031008ENSMUST00000042146ENSMUST00000114126ENSMUST00000146864ENSMUST00000154929ENSMUSG00000048450ENSMUST00000063116ENSMUST00000183013ENSMUSG00000062329ENSMUST00000073554
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000152953 ENST00000282908 0.875±0.00 1.552±0.00 1.961±0.00 0.663±0.00 0.487±0.00 0.872±0.00 0.169±0.00 3.667±0.00 0.373±0.00 0.203±0.00 N/A 0.527±0.00 2.452±0.80 2.728±0.50
ENST00000505508 N/A N/A N/A N/A 0.097±0.00 N/A N/A N/A 0.404±0.00 N/A 0.429±0.00 N/A N/A 3.795±0.00
ENST00000508728 N/A N/A N/A N/A 0.068±0.00 N/A N/A N/A 0.023±0.00 0.602±0.00 0.537±0.00 N/A N/A 3.407±0.00
ENST00000510398 N/A N/A N/A 0.591±0.00 0.126±0.00 0.207±0.00 0.071±0.00 N/A N/A N/A N/A 0.285±0.12 N/A N/A
ENST00000511959 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.489±0.00 N/A N/A
ENST00000512018 N/A N/A N/A N/A 0.041±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512636 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513705 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000163132 ENST00000382723 5.748±0.00 1.872±0.00 0.142±0.00 1.378±1.06 6.893±0.00 2.151±2.13 1.089±0.83 1.094±0.00 0.512±0.31 3.141±2.85 0.880±0.00 2.032±1.29 5.397±1.30 1.217±0.80
ENST00000468421 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000170891 ENST00000307746 0.446±0.00 4.296±0.00 N/A 1.077±0.91 0.570±0.32 1.035±0.58 0.072±0.04 0.221±0.00 N/A 10.659±8.22 0.090±0.00 0.835±0.50 17.249±7.67 0.844±0.38
ENST00000506508 N/A 4.500±0.00 N/A 0.626±0.00 N/A 1.003±0.00 N/A N/A N/A 8.118±0.00 0.279±0.00 0.286±0.00 N/A 0.889±0.00
ENST00000509419 N/A N/A N/A N/A N/A N/A 0.255±0.00 N/A N/A N/A N/A 0.204±0.00 N/A N/A
ENSG00000200761 ENST00000363891 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.113±0.00
ENSG00000247708 ENST00000499430 N/A N/A N/A N/A N/A 5.263±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000502693 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507244 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512438 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514763 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000608184 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000610009 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000251587 ENST00000509421 N/A 0.012±0.00 N/A N/A 0.012±0.00 N/A N/A 0.024±0.00 0.097±0.00 N/A 0.011±0.00 N/A N/A 0.018±0.01
ENSG00000273396 ENST00000609099 0.058±0.00 N/A N/A N/A N/A N/A 0.028±0.00 N/A N/A N/A N/A N/A N/A 0.097±0.07
ENSG00000280310 ENST00000624794 0.030±0.00 0.031±0.00 0.185±0.00 0.467±0.00 0.129±0.00 0.074±0.00 0.087±0.00 0.063±0.00 0.065±0.00 0.127±0.00 N/A 0.210±0.12 0.121±0.05 0.156±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029123 ENSMUST00000094836 0.047±0.03 0.174±0.07 0.037±0.00 13.512±9.66 0.342±0.09 0.013±0.00 0.332±0.04 4.077±0.68 0.479±0.53 0.027±0.01 0.014±0.00 0.239±0.11 0.083±0.08 0.636±0.45
ENSMUSG00000029125 ENSMUST00000031008 4.148±0.39 N/A 4.453±0.49 N/A 4.390±0.00 N/A 1.669±0.07 N/A 2.730±0.58 N/A 2.851±0.59 8.761±0.32 9.475±3.64 N/A
ENSMUST00000042146 15.106±2.58 12.786±1.27 7.622±1.02 N/A 11.791±2.11 9.923±2.12 5.724±0.92 8.288±3.50 7.590±2.40 11.741±0.51 2.822±0.86 13.860±4.42 7.370±2.19 12.872±5.05
ENSMUST00000114126 1.754±0.00 N/A N/A N/A N/A 1.309±0.00 N/A 1.473±0.05 0.719±0.12 N/A N/A 2.309±0.19 N/A 2.840±0.00
ENSMUST00000141286 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146864 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.840±0.27 16.385±6.70 34.219±13.97 27.227±0.00
ENSMUST00000147667 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154929 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 24.051±0.00 22.739±3.49 49.079±0.00
ENSMUSG00000048450 ENSMUST00000063116 21.255±19.40 1.966±0.26 1.661±0.20 3.930±1.42 6.951±0.68 0.283±0.08 1.591±0.25 0.487±0.07 0.071±0.05 2.490±0.19 0.968±0.34 10.774±5.02 0.676±0.49 0.051±0.04
ENSMUST00000183013 9.033±0.17 N/A N/A N/A 0.402±0.00 0.107±0.00 N/A N/A 0.008±0.00 N/A 0.107±0.00 N/A 0.146±0.01 0.022±0.00
ENSMUSG00000062329 ENSMUST00000073554 8.158±1.46 2.602±0.90 8.565±1.28 0.352±0.20 7.133±1.56 7.107±1.12 24.025±4.38 2.061±0.56 0.061±0.03 19.727±5.32 2.852±0.59 2.067±0.73 0.367±0.26 1.291±0.48

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